Esox lucius (northern pike): 105029332
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Entry
105029332 CDS
T04894
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X3
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
els
Esox lucius (northern pike)
Pathway
els03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105029332 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
els03019
]
105029332 (patl1)
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105029332 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
105029332 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
105029332
NCBI-ProteinID:
XP_012996153
UniProt:
A0A3P8ZAL5
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Position
LG25:16521032..16537167
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AA seq
797 aa
AA seq
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MFRYQSLDEDCTLEEEEEEGLVEEEDEIDQFNDDTFGAGAIADDDWQEEHKRLSGLEEQK
NSARGGAGTVGGASGDAGHLPSTSSLPLPQHSSQPPPGLGEQGGGDLADALARLILGADP
AIARACGPAGPGDRSRGLPAPPSVPQQHHPQAHPHQLPLAGLPPGPPHPSLLSYQQHQHL
LRRGGPPMQQVNSHNIWESNMGFGPVSVTPGLVTHMEDNPLLSIIKEVGLPSRPPPMMSE
DGRDLSERVPPPRSSSPVIGSPPVRAVPIGTPPKQPMSHAMNHHHQQQVHHPTAVHIRAP
VHHRYPPPFPERLSPNTLLNIANSPLCRPPFSAGVGPVLSQLQRAQMLNSQVAGFPRGCQ
GPPMLPGGGGFRPFFGQPPPHRMGPHPGGPPPNHNHVACPVIRHNTTHLHPQHRRILTQR
MQSRGGDRGGRVGDRRSRDPYSNLMTQREKDWVAKIQMMQLQSTDPYLDDYYYQNYFEKM
EKKQERDRDSIRKEHTTKLITPQVAKLEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVT
SRTDDEEKREKQVWNKRRQILYTVEKMYSLLLEVQDFEKRFLLTPEEQREALLEQHKTQT
LQLYGSLKEKEWDDRVSDEQCLMIMSVRKGKRLISRLLPFLPQPHAAAVVMGIARNLPTL
AKKDRQDQVLCWLVEPVAAVVSSLSSSALTDLLQELQGSDGQLSRVLQNKFGVTLLYLIL
SEGERMQSSDPNCQLMDDNRWTELVFSVTRELLNVAPSSLAPPLFTPPNLLSLFSRYVDR
QRLEQLQEKLQISALSR
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttatcagtcccttgatgaagattgtaccctggaggaggaggaagaggagggt
ctggtagaagaggaggatgagattgaccagttcaacgacgacaccttcggggccggggcc
atcgcagatgatgactggcaggaggagcacaagcgcctctccgggctcgaggaacaaaag
aacagcgcacgcggtggtgcagggacagtaggaggagcttcgggggacgccggccacctc
ccctccacgtcctccctccctctgccccagcactcctcgcagccccctccgggcctgggg
gagcagggcggaggggacctggccgatgccctggcccggctgattctcggggcggacccg
gccatcgcccgggcatgcggtccagctgggccgggggaccggtcgaggggactcccggcg
ccgccctccgtgccccagcagcaccatccgcaggcgcacccccaccagctccccctggcg
ggtctgccccctggcccgccccacccctccctgctcagctaccagcagcaccagcatctc
ctgcgccgaggcggacctccgatgcaacaggtaaactcgcacaacatctgggagagcaac
atggggtttggcccagtgagcgtcacccctggactagtcactcacatggaggacaatcca
ctactgtccatcatcaaagaggtgggccttccttcacggcccccaccaatgatgagtgag
gatgggcgggacttgtctgaacgggtccccccaccacgctcgtcctctccagttattggt
agccctccggtaagggcggtgcctatcgggactccccccaagcagccaatgagtcacgct
atgaatcatcatcatcagcagcaggtccaccatccaaccgccgttcacattcgagccccg
gtccaccaccgctacccccctcccttccccgagcgcctgtcccccaacacccttctgaac
attgctaactcccctctgtgccgtcccccattctctgctggagtgggccccgttctgtcc
cagctccaacgcgcccagatgctcaactctcaggttgctggtttccccaggggctgccag
ggtccgccgatgctccccggcggcggaggtttccggcccttcttcggccagcccccgccc
caccgcatgggcccccaccccggcgggccccctcccaaccacaaccacgtggcctgcccc
gtcatccggcacaacaccacgcaccttcacccccagcaccgccgcatactcacccagaga
atgcagagccgaggaggggaccgtggcgggcgagtgggcgaccgacggagccgtgacccc
tacagcaacctgatgacccagcgggagaaggactgggtggccaagatccagatgatgcag
ctgcagagcaccgacccctacctggacgactactactaccagaattactttgagaagatg
gagaagaagcaggagagggacagggacagcatcaggaaggagcacaccaccaaactgatc
acgcctcaggtggccaagctggaacacacttacagaccagtgcagtttgcgggctcgctg
ggtaagctgactgtgtccagtgtcaacaaccccaggaagatgatcgatgcagtcgtgacc
agtcgcacagacgacgaggagaagagggagaagcaggtgtggaataagcgacggcagatc
ctgtacaccgttgagaaaatgtacagcctgttgctggaggtgcaggactttgagaagcgc
ttcctgctgacgccggaggagcagcgagaggccttgctggagcaacacaagacccaaacc
ctgcagctctacggctccctcaaggagaaggagtgggacgaccgagtgagcgacgagcag
tgcctgatgatcatgtcggtgcggaaggggaagcgcctcatctctcggctcctcccattc
ctgccccagccgcatgccgccgccgtcgtcatggggatcgcccggaacctgcccaccctg
gccaagaaagaccgacaagaccaggtgctgtgctggttggtggaacccgtcgccgcagtg
gtctcgtccctgtcaagctccgccctcacagacttgttgcaggagctgcagggcagcgac
ggtcaattgtctagagtgctgcaaaataagtttggtgtgacgctgctgtacctgatcctg
agtgagggggagcgaatgcagagctcagaccccaactgtcaactgatggacgacaatcgg
tggacagagctggtgttctctgtgaccagggagctgctgaacgtcgccccgtcgtccctg
gcccctcccctcttcacccctcccaacctgctgtctctcttctcgcgatacgtcgacaga
cagaggctggagcagctgcaggagaagttacagatctctgcattgtcccggtag
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