Esox lucius (northern pike): 105029750
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Entry
105029750 CDS
T04894
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
els
Esox lucius (northern pike)
Pathway
els03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105029750 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
els03041
]
105029750 (dhx38)
Enzymes [BR:
els01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105029750 (dhx38)
Spliceosome [BR:
els03041
]
Complex C
Other components
Step II factors
105029750 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
AAA_30
AAA_16
Flavi_DEAD
PhoH
AAA_7
Motif
Other DBs
NCBI-GeneID:
105029750
NCBI-ProteinID:
XP_028979711
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All DBs
Position
LG02:complement(23952820..23974260)
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AA seq
1262 aa
AA seq
DB search
MEDDASLHRLEGNDPTTQVGGLMVKKKSAAAEPHVFRAPTPRTSLLGLDLLAAQKRKERE
GREQTEADIDDQKNKKSKVSSYKDWEEGKSDSESDEEDKDEEEQDGKKESSRKYRVTGSE
TPSNPGGVSEEFRRKNQQREKDRREHGMYASSKEEKNREREKDRERTRDKDRDRRGDRNE
RERSHSRGSNRSERGDRSDRSERSQREGWSSERISRGSKREEPPTPQTRPKDGTPSRTSW
DEDDSGYASSRRSHWESPSPAPMHKDSDRSERSERSPRSGRESERREKSVRGRYPDDTPL
PTPSYKYNEWANDRKHLGSTPRLSRGKGKNEGEDGIAFDNEDEKEQWEEDQKQADRDWYM
MDEGYDEFHNPLTSTSEEYVKKREQILQKQTQKRISAQRRQINEDNERWETNRMLTSGVV
QRLEVDEDFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDPTSDLAIISRKGS
QLVRKHREQKERKKAQQKHWELAGTKLGDIMGVKKTEEADISGGKPVGEDGKVDYRTEQK
FADHMKDKSEASSEFAKKKTLLEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQ
LTQYLHEDGYTSYGMVGCTQPRRVAAMSVAKRVSEELGSNLGEEVGYAIRFEDCTSEKTV
IKYMTDGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRSDLKLIVTS
ATMDSDKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGMWGDIL
IFMPGQEDIEVTSDQIIERLEDLESAPPLAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVA
TNIAETSLTVDGIMFVVDAGYCKLKVFNPRIGMDALQVYPISQANANQRAGRAGRTGPGQ
CYRLYTQSAFKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSM
YQLWILGALDNTGALTPTGRMMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIF
YRPKGREEESDQVREKFSVPESDHLTYLNVYLQWKNNNYSSIWCNEHFIHTKAMRKVREV
RSQLKDIMVQQRMNLVSCGSDWDVIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPT
SSLFGMGYTPDYITYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRMENRRR
AKEEITNMEEEMSLAQQQLRSRREDQDKKSNISSVRAVKICTPGRKEEAPMTPKRTPARF
GL
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgatgcgtcactgcaccgactggagggcaacgatcccactacgcaggtcggc
gggctgatggtaaagaagaagagtgcagcagcagagcctcatgtctttcgtgcgccaact
ccacgcacctctctccttgggttggatctcttggcagctcaaaagagaaaggagcgtgag
ggcagggagcagactgaggctgacattgatgatcagaaaaacaaaaagtccaaggtatcc
tcctataaggactgggaagaagggaaaagtgattctgagtcagatgaagaggacaaggat
gaggaggagcaagatggtaaaaaagagagtagcagaaagtaccgtgtgactggctcagag
acaccctctaatccaggaggggtgagcgaagaatttcgtcgaaagaaccagcagagggag
aaagaccgtcgggagcatggaatgtatgcctcctccaaagaggaaaagaatagagagagg
gagaaagacagagagaggaccagagataaggacagagatcggaggggagacagaaatgag
cgggagcgcagtcacagccgtggcagcaaccgctcagagcgcggggaccgcagtgacagg
agtgaacgctcacaaagagaaggctggtcctctgagcgcattagcagagggagcaagagg
gaggagcctcccacaccacagacccgccctaaagatggcaccccctcgcgaaccagctgg
gatgaggatgacagtggctatgccagctcgagacgttcccactgggaatctccctctccg
gcccctatgcacaaggactcggacaggtctgagcgatcggagcgcagcccccgctcagga
cgggagagtgagaggagggagaagtcagtcagaggccggtatcctgatgacacacccctt
cccaccccatcatacaagtacaacgaatgggccaatgaccggaagcatttaggctccact
ccccgtctgtcccgtgggaaaggtaagaatgaaggagaggatggcatcgcctttgataat
gaggatgagaaggaacagtgggaggaggaccagaagcaagcggacagagactggtacatg
atggacgaaggctatgatgaattccacaaccctttgacctccacttctgaggagtacgtg
aagaagagggagcagatcctgcagaagcagacacagaaacgcatctctgcccagagacgg
caaattaatgaggataatgagcgctgggagactaatcgtatgctgaccagcggagtggtt
cagaggctggaggtggatgaagactttgaggaggacaacgctgccaaagtccacctgctg
gttcacaacctggtccctcccttcttggatgggaggatagtcttcaccaagcagccggag
ccggtcatccctgtgaaagatcccacctctgacctggccatcatctcccgcaagggcagc
cagttggtccgcaagcaccgcgagcagaaggaacgcaaaaaggctcaacagaaacactgg
gagctggcgggaaccaagctgggggacatcatgggcgtgaagaagactgaggaggcggat
atctctgggggcaagccagttggagaggatggcaaggtggactacagaacagagcagaag
tttgcggaccacatgaaagataagagtgaggccagcagtgagtttgctaagaagaagact
ctgttggagcagaggcagtatctgcccatcttcgctgtccggcagcagctgctcaacatc
atcagagacaacagcattgtgattgtggtgggggagaccggcagtgggaagaccacccag
ctgacccagtacctccacgaggacggctacacaagctacggcatggtgggctgcacccag
ccccgcagagtggcggccatgagtgtggccaagagagtcagtgaagaactgggcagcaac
ctgggagaggaggttggatatgccatccgttttgaggactgtacgtcggagaagactgta
ataaagtacatgacggacggtatcctactgagagagtctctcagggagtcagacttggat
cactacagtgctgtcatcatggacgaggcccatgaacgctccctgaacactgatgtgctg
ttcggcctgctacgagaggttgtatcaaggcgatctgacctcaagctgattgtcacctcc
gccaccatggactctgacaaatttgcagctttcttcggcaacgttcccatattccacatt
ccaggaagaacattccctgttgacatcttattcagcaagactccccaggaggactatgtg
gaggcagcagtgaaacaggccctgcagatccacctgagcggtatgtggggagacatcctc
atcttcatgcctggccaggaggacattgaggtgacgtcagatcagatcatcgagcgcctg
gaggacctcgagagtgctcctcctctggcggtactacccatctactcccagctgccctct
gacctccaggccaagatcttccagaaggctccagacggcgtgaggaagtgcattgttgcc
accaacattgctgagacctccctgaccgtggacggcataatgtttgttgtggacgctgga
tactgcaagctgaaggtgttcaaccctcgcattggcatggatgccctgcaggtgtacccg
atcagtcaggctaatgccaaccagcgtgcgggcagagcaggacgtaccggaccgggccag
tgctacaggctttacacccagagcgcctttaagaatgagatgttgaccaccaccatccca
gagatccagcggaccaacctggccaatgtggtgctgctgctcaagtccctgggggtgcag
gaccttctgctcttccacttcatggaccccccgccggaggacaacatgctcaactccatg
taccagctctggatcctgggggccctggacaacacaggtgccctgacgcccactgggagg
atgatggtggagtttcctttggacccggctctgtccaagatgctgattgtgtcgtgtgac
atgggctgcagtgctgacatcctcatcatcgtctccatgctgtctgtccccgccatcttc
tacaggcccaagggtcgtgaggaggagagtgaccaggtgagggagaagttctctgtcccg
gagagtgaccacctgacctacctgaacgtctacctgcagtggaagaacaacaactactcc
agcatctggtgcaacgagcacttcatccacaccaaggccatgcgtaaggtgcgtgaggtg
cgctcccagcttaaagacatcatggtgcagcagcggatgaacctagtgtcttgtggctcg
gactgggacgtcatccggaagtgcatctgcgctgcctacttccaccaggcggccaaactg
aaggggatcggggagtatgttaacgtgcggacgggcatgccctgtcacctccaccccacc
agctccctgtttggcatgggctacacccccgactacatcacttaccacgagctggtcatg
accactaaggagtacatgcagtgtgtgacggccgtggatggagaatggctggcggagctg
ggacccatgttctacagcgtcaaacaggctgggaagagcaggatggaaaaccgtcggcgg
gccaaggaggagatcactaacatggaggaggagatgtcgctggcacagcagcagctgagg
agcaggagggaggaccaggacaagaagagtaacataagcagcgtcagggccgtgaaaatc
tgcaccccgggaaggaaagaagaggctcccatgacaccaaaacgcaccccagcccgtttt
ggactctag
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integrated database retrieval system
