Esox lucius (northern pike): 105030863
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Entry
105030863 CDS
T04894
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X2
KO
K06237
collagen type IV alpha
Organism
els
Esox lucius (northern pike)
Pathway
els04382
Cornified envelope formation
els04510
Focal adhesion
els04512
ECM-receptor interaction
els04518
Integrin signaling
els04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
els00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105030863 (col4a5)
04518 Integrin signaling
105030863 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
105030863 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
105030863 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
105030863 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
els04147
]
105030863 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
els00536
]
105030863 (col4a5)
Exosome [BR:
els04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
105030863 (col4a5)
Glycosaminoglycan binding proteins [BR:
els00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105030863 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
105030863
NCBI-ProteinID:
XP_012988004
LinkDB
All DBs
Position
LG24:24527204..24617690
Genome browser
AA seq
1680 aa
AA seq
DB search
MNKNLKRLAAGLVLVTLCIAVQEAESAACHGCASGSKCDCSGVKGVKGERGFPGLQGQPG
VPGFPGPEGPIGPRGEKGDDGPQGPSGPKGIRGPPGLPGFPGTPGIPGLPGQDGPPGPRG
LAGCNGTKGERGFPGLPGYPGLEGRPGQPGAPGPKGDPGEIISSSQFGAKGGVGLPGPPG
APGNPGPPGLSGPVGPPGPRGYEGRPGPPGPPGPKGNMGLNFQGPKGDKGDSGVQGPPGP
PGQVGEQKKPPESEIQRGEKGDQGLPGAVGDRGFPGPPGPAGGNKGDKGEPGEPGKRGKP
GKDGDPGPPGFPGVKGDPGSPGLPGRDGDRGDKGERGFPGPPGEVYDQPLGPPRVGPKGE
PGFSGAPGRKGERGGPGLPGSEGRPGPPGFGGPGLPGPPGYPGERGQKGDEGQPGVSLAG
PPGQSGAPGFPGPPGPPGPPGTSSGNGECPGVPGLPGKQGEAGYQGETGQKGEKGEKCVN
CFSNGLAVPGPPGPPGPPGFPGGSGFQGAKGDRGYPGDPGPAGPSGLPGTPGVPGPPGEK
GDPGDAIPVDGVKGDKGDTGFPGPPGLPGLDGRPGRDGVPGPPGPKGTSGSLSVKGERGP
PGEPGLQGLPGDRGVPGAPGFGPQGPPGEKGVQGVSGRSGVPGPPGPKGEPGQTVAEKGQ
SGPRGQDGDPGLPGNPGNPGATGQPGLNGLPGSKGDPGLPGIGLPGPPGPKGFPGTPGVP
GIPGGPGRPGVDGLPGQPGLPGPKGEPGFGLPGPQGPPGIPGNKGISGPKGDPGFPGNPG
PPGRSGFDGTPGPKGDPGLPGPPGARGPPGPPSFGPPGNPGPPGPPGPMGSPGYAGTPGL
KGDPGPPGQGIPGLPGERGNPGFPGGPGGPGPQGNPGNPGRDGLPGLPGSKGDMGVMGAP
GPLGTPGVPGVPGFPGPKGEDGFPGRPGGPGGSGSKGDRGDPGLPGPPGPSYPAEQLKGN
KGEPGAPGLGGLPGQKGIPGLPGDPGQPGEDGRPGIPGPQGPKGDPGFPGSPGVPGPPGS
KGNMGEMGFPGPSGAKGTPGLPGRSGTPGNPGVPGPPGAKGDPGTPGFGIPGPPGPKGDP
GQQGFPGESGTRGLPGSPGLPGFPGAPGSKGESGLPGFQGSPGIPGPKGQDGIPGNPGPS
GPPGRPGENGRPGQSGLPGDKGQAGRDGIPGPAGVKGDPGPPGFGVPGPPGLPGLPGAKG
DFGPPGPSGSPGLPGQKGEVGFPGIPGSPGSIGPPGPPGLALQGPKGNPGPPGPPGRAGP
PGPEGVRGPAGSGGTKGEKGISGAPGLPGFPGAKGDTGLAGYPGTPGLPGPSGQKGDSGL
PGVPGFPGQKGDSGFPGSSGTPGEPGDQGPPGPPGESMVAPAPIVTKGERGPPGITGLPG
VRGPPGPGGQDGLPGQPGQPGPPGPDGPPGFSGAPGRKGDSGPAGQPGERGYPGPPGSDG
PQGPPGPSGTALVAHGFLISRHSQADEVPICPEGTSLIYDGYSLLYVQGNERAHGQDLGT
AGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPTPMPMNMAPITGDAIKPYISRCA
VCEAPAMVIAIHSQTIQIPNCPQQWETLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFR
SAPFIECHGRGTCNYYGNSYSFWLATVDQSEMFRKPQSETLKAGNLRTRVSRCVVCMKRT
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaacttgaaaaggctcgcggcagggttggtgctcgtaaccctgtgtatcgca
gtccaagaggcagaatcagcggcgtgtcacggctgtgcttcgggatcgaagtgtgactgc
agcggagtgaaaggggtgaagggagagagggggttcccgggactgcagggtcagcctggc
gtgcctggtttccccggacctgagggcccaatcggaccccggggcgagaagggcgatgac
ggacctcaagggccatcaggtccaaaaggaatcaggggacctccgggactgcccggattc
ccaggaacgccaggaattccaggtctccctggacaggacggacctccgggccccagggga
ctcgcaggatgcaacgggacaaagggtgagagaggtttcccaggattaccagggtaccct
ggactggagggccggccgggtcaacctggcgctccaggcccaaagggtgacccaggtgaa
atcatctccagttcccagtttggagcaaaaggaggtgtcggtcttcctgggccacctgga
gctcctggcaacccaggccccccaggactgtcaggtcctgtcgggccccccggccccaga
ggttatgagggacgtcccggacctcctggtcctcccggacctaagggaaatatggggttg
aacttccaaggacccaaaggagacaagggtgattctggtgtgcagggtcctcctgggcca
ccaggacaggtgggggaacagaagaaaccccccgagtcagagattcagagaggagagaag
ggcgatcaaggtttacctggtgcagttggtgatcgtggtttcccaggaccccctggtcca
gctggcgggaacaagggagacaaaggcgagcccggagaaccaggaaaacggggcaagccc
gggaaagatggcgatccgggccctcccgggtttcctggtgttaaaggagatccaggcagc
cccggtcttccgggccgggacggtgacaggggtgacaagggagagcgtgggttccctggt
cctccaggcgaggtgtatgaccagcctctgggcccaccgcgtgtgggacccaaaggagag
ccaggttttagcggggccccgggaaggaaaggagaacgaggaggaccgggtctcccgggt
tctgaaggtcgaccgggacccccgggttttggaggtccaggtctgcctggtccccccggc
tatccaggagaaaggggtcagaagggagacgagggccagccaggtgtctctctcgccggg
cccccaggacaaagtggcgctccagggttcccagggcctccaggacctcccggtcccccg
ggtacctcttcagggaatggagaatgtccaggggtccctgggttaccaggaaaacaaggg
gaagcaggttaccagggagaaactggacagaaaggtgaaaagggagagaagtgcgtgaac
tgtttctccaacggccttgccgtccctggaccacccggcccacccggacctcctgggttc
ccaggtggatcaggattccaaggggctaaaggtgacagaggatatcctggtgatcctggc
cctgcaggtccttctggtttgcccggcacccccggtgttcccgggcctcctggagagaag
ggtgacccaggagatgctatccctgtcgacggggtgaaaggcgataaaggagacactggg
ttccccggacccccgggcctgcctggcctggatgggagacccggtcgcgatggagttcct
ggacctcctggtcccaaaggaacatctggttctctgtcagtgaagggggagcgagggcct
ccaggtgagcctggtctgcagggtctccctggtgataggggtgtccccggtgccccagga
ttcggcccgcagggtccccctggagagaagggtgtccagggtgtctcaggcagaagtgga
gtacctggaccaccaggacctaaaggtgagccggggcaaacggtcgcagaaaagggtcag
tcaggaccacgaggacaagatggagaccccggtctacctggaaatccaggaaatcctggt
gcaacaggacagcctggtctcaatggattgccaggttccaagggggaccccggactccca
ggcataggactgccaggaccccccggacctaaaggattccctggtacacctggtgtacca
ggtattcccggaggtccaggacgaccaggagtggacggtctcccaggtcagcctggttta
cctggacccaaaggagaaccagggtttgggttgccaggtcctcagggccctcccggaata
cccggaaataaaggaatatctggacccaaaggagaccctggttttcctggcaaccccggc
ccgcctggtcgatccggctttgatggcacaccaggacccaaaggtgaccctggacttcca
ggtccacccggggcccgcggccctcccggaccaccttcatttggccctccgggcaacccc
ggcccgcctggacctcctgggcctatgggttctccagggtatgcaggcacccccggattg
aaaggagatcccggtcctcctggccagggcattccagggttgcctggtgaaagaggaaat
cccggtttccccggcggccctggtggacctggacctcagggtaaccctggcaatcccggt
cgcgacggacttcctggccttcctgggtctaaaggagacatgggagtgatgggagctcct
ggacccctaggaactcctggagttcctggagtgcctggcttccctggacctaaaggtgaa
gacggtttcccagggcgacctggtgggcctggtggttcaggttcaaagggagacagagga
gatcccggtcttcctggacccccaggaccaagctaccccgcagaacaactgaaaggaaat
aaaggagagcccggagcaccaggtttgggtggtctcccgggtcagaagggtattccgggt
ctgcctggagacccgggccaaccaggagaggacggaagacctgggatacctggaccacaa
ggtcccaaaggagaccccggtttccccggaagtcctggtgtaccaggaccccctggatct
aaaggcaacatgggagaaatgggtttcccaggaccctctggagctaaaggaacaccaggt
cttcctggtcggtcgggcaccccgggcaacccaggagtaccggggccccctggagcaaaa
ggagaccctggtacccccggctttggtatcccaggacctccagggcccaagggtgatcct
ggtcagcaaggttttcccggagaaagcggaacaagaggactgcctggatcaccaggtctt
ccaggctttcctggagctccaggatccaagggtgaatcaggcctcccaggattccaagga
tctcctggtattcccggacctaagggtcaggatggtatccctggtaatcccggtcccagt
ggccccccaggccgaccgggagagaatggccgcccaggacaatctggattgccaggcgac
aaagggcaggcaggacgcgatggaatcccaggaccagcaggagtcaaaggagacccaggt
cctcctggttttggtgttcctggccctcctggtctcccagggttaccgggtgctaagggg
gatttcggtccccctggtccttccggtagcccaggcctccctggtcagaaaggggaagtg
ggtttccctggaattcctgggtcccctggcagcattgggccccctggtccaccaggttta
gccctccagggtcccaaaggtaaccctggacctcctggcccacctggaagagcaggtcct
cccggtcctgagggtgtacgtgggcctgccggcagtggcggaactaaaggcgagaaggga
atctccggagctcccggattgcctggtttccccggagcgaagggagacacaggacttgct
ggatatccgggtactcctggccttccgggacccagtgggcaaaagggagacagtggactt
cccggcgttcccggattcccaggacaaaagggagattctggatttcccggatcatcaggt
actcctggtgaacctggtgaccagggaccaccgggaccccctggtgaatcaatggttgct
ccggcccccatagttacgaaaggagagcgggggccccccggaatcacaggtctaccaggt
gtccggggtcctccggggcccggtggacaagatggactcccaggtcagcccggccagcct
ggaccccccggccccgacggccccccaggattcagcggagcccccggccgcaagggagat
tcaggaccagccggtcagccgggtgagcgtgggtacccagggccccctgggtcagatggt
ccccagggacctccgggtccttccgggacagctttggtggcccacggcttcctgatttcc
agacacagccaagccgacgaggtcccaatatgcccagaaggaaccagcctgatttacgat
ggttactctctactctacgtacagggcaacgagagggcccacgggcaggacctgggtact
gctggcagttgtctgcgtcggttcagcaccatgccattcatgttctgcaacataaacaat
gtatgtaacttcgcctcccgcaacgactactcctactggttgtccacgcccacgcccatg
cccatgaacatggcccccatcaccggagacgccataaaaccttacatcagcaggtgcgcg
gtgtgtgaggcccctgccatggtgattgccatacacagtcagactattcagatccccaac
tgcccacaacagtgggaaactctgtggatcggatactccttcatgatgcacaccagtgcc
ggcgctgagggttcgggtcaggccctagcctcgcccggctcctgtctagaagagttccgg
agcgctccattcatcgagtgtcacggacggggcacctgcaactactacggcaactcttac
agtttctggttggccaccgtcgaccaatccgaaatgttcaggaagccacagtcagaaaca
ctgaaggcgggcaacctgcggacacgtgttagccgctgcgtggtgtgcatgaagaggacg
taa
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