Esox lucius (northern pike): 105031453
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Entry
105031453 CDS
T04894
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
els
Esox lucius (northern pike)
Pathway
els04382
Cornified envelope formation
els04510
Focal adhesion
els04512
ECM-receptor interaction
els04518
Integrin signaling
els04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
els00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105031453
04518 Integrin signaling
105031453
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
105031453
09142 Cell motility
04820 Cytoskeleton in muscle cells
105031453
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
105031453
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
els04147
]
105031453
00536 Glycosaminoglycan binding proteins [BR:
els00536
]
105031453
Exosome [BR:
els04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
105031453
Glycosaminoglycan binding proteins [BR:
els00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105031453
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
105031453
NCBI-ProteinID:
XP_019899802
LinkDB
All DBs
Position
LG24:complement(24372583..24526399)
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AA seq
1729 aa
AA seq
DB search
MKFWIFALVVITALEATHGGITGEACNGLDCSGGCICNPEKGSRGRPGALGPVGPSGPEG
ISGSYGPRGPKGEGGNIGIKGPSGLKGDKGPMGVPGFPGNDGVPGHPGAGGGRGLAGPDG
CNGTQGDTGPRSLDGGIPGSPGLDGPFGPKGQKGEPVYIGFNGGSPGLPGLDGVPGPRGP
GGSSGLIGPRGPEGFPGPPGLPGPPGPVGSNSLGFQGEPGDKGDAGQAGAQGPPGSESYV
SGGITTAVYKGDKGDVGPPGDPGTPLVNGVVEFVGFPKGDKGPKGEIGYKGLRGFPGFPG
APGPSGFPGEDGEKGILGYPGGRGPPGFNGPPGPPGRQGFTGSPGLPAQPGYRGPKGDQG
DRGPPGPPIYTGGQEVVVQGPPGDNGLDGLPGPPGDLGVPGIPGSPGPQGPRSDGDGREG
SLGLPGSQGPKGERGNPGRQAYGIEGQPGRPGLPGPPGTPGPPGPSGSPLIVDFFNEVSG
PPGPPGGQGPPGARGYKGRKGELGDCQCLGGGTLGEIGPPGPPGSDGRPGGSGRQGENGD
RGSPGFGGQQGTPGRPGERGFFGRKGEKGSPYYPRFSQAIKGEMGSRGPQGPPGEMGRSG
RDGLPGFPGQPGPPADDFGYGIVGDKGFPGLPGPKGRVGEPGENGIGYQGTIGTRGFPGD
TGPSGLPGAPGSRGPKGDSCGQEGVNDAEGGLTLPCRLPGEDGDPGSRGTPGRPGPKGQA
GFPGSPGQRGFDGVKGERGGPGFGGLPGPQGFPGPRGDAGVPGISGEGRPGAPGKNGLPG
RPGERGKRGEVLGASPGPPGLPGFQAEPGAKGQPGTTGLSGEQGIDGRFGIPGAKGERGT
DGYAGISGPPGFPGDNIGGGLPGPPGPAGSRGPSGPLGCQGYPGTKGFRGDPGFPGLAGF
KGKPGIPGANGPPGLRGVPGPPGPGGREGFPGGPGRKGESGSPGLVGFPGMPGNPGRPGS
QGVKGAPGFSGRDGQPGELGVTGLKGDRGYPGRPGERSPPPSPLNLVNGQKGDNGPNSLA
GFPGPRGEKGFPGQPGRQGLPGLPGYSDRAKGVPGSPGITGRPAGPGSPGPSGSPGIIGF
PGMPGPRGDDGEPGFPGNFGVPGQPGAKGVRGESTGFSGRPGNKGETGSRGYPGVSGVKG
DPGDSGQQGSRGFSGKKGEQGDPGRPGLTGTPGFTGPKGLNGYPGERGREGSTGRPGSTG
LPGVKGVPGFPGLNGLNGLAGPKGLPGNPGYSEGGRTGAPGADGLKGERGSFIPGVPGYN
GVKGTKGESGIPGTTGFPGPPGPRGETTSSNIPGALGNPGLPGLDGESGYRGPPGPAGPP
GPGTIQGDRGDSGLSGFPGTPGNRGDPGVSGSPGRDGSPGFQGEKGTPGYSGSPGQKGFP
GDKGYYGGKGPKGSKGFPGRKGLPGSLYPFPGPENLGTGDEGEPGSNGLSGSIGGPGSPG
RTGRVGPKGRPGPVGKLGRNGESGLDGPYGDPGAPGFPGPTGSQGRSGKAGPQGLPGSAP
RSRSIGYTLVKHSQSSQVPMCPQGMTRLWDGYSLLYVEGQEKAHNQDLGLAGSCLPRFNT
VPFLYCTPNEICYYASRNDKSYWLSTTAPIPMMPVGEEAISQYISRCSVCEAYSQAVAVH
SQDLSIPTCPAGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKG
TCHYFANKYSFWLTTVEPNREFDPPPMDTLKGVNQRSRVSRCQVCSKIL
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atgaaattctggatttttgcactcgttgtcatcacggcattagaagcaacacacgggggg
atcacaggagaagcttgtaatgggctggactgcagtggaggatgcatctgtaacccagag
aaaggcagccggggtcgtccaggggcccttggacctgttggacccagtggaccagagggt
atctcaggcagctatggacctagagggcccaaaggtgaggggggtaatatcggaataaag
ggcccctctgggctgaaaggagacaaggggcccatgggtgtacccgggttcccaggaaat
gacggagtccctggtcaccctggggccggcggaggcaggggtctggcagggcctgatggt
tgcaatgggacccagggagacacaggccccagatcgctagatggaggaattcctggatct
cctgggctggatgggccttttggtcctaaaggtcagaagggagagcctgtttacattgga
ttcaatgggggaagtcctggtttgcctgggctggacggtgtacctggtcctagaggtcca
ggaggaagttccggtctcattggccccagaggtccggaaggattccctggtcctccaggc
ctccccggcccccccggtcctgtaggaagcaacagcctagggttccagggagagccagga
gacaagggcgacgcgggtcaggccggagcccaaggcccgcccggcagcgagtcgtacgta
agcggcggcataacaaccgctgtctacaaaggagataagggcgatgtgggcccgccagga
gacccaggcacgccccttgtcaatggagtggtggagtttgtgggctttcccaaaggagac
aaaggacccaagggagagataggttacaaaggattgcgtggattccctggttttcccgga
gctcctggtccttccggttttcctggtgaagatggagaaaagggcattctggggtatcca
gggggacggggtcctcctggtttcaatggaccgcccggccctccaggaagacagggattt
acaggaagtccaggattacctgcgcaaccagggtacaggggacctaagggcgaccagggt
gatagggggcctcctggtccccccatctacactggcggacaagaggtggttgttcaagga
ccaccaggtgacaacggtttagatggcttacctggccccccaggtgacctgggtgtccca
gggattccaggatccccaggaccacaaggaccacgtagtgatggcgatggtcgtgaaggc
agcctagggctcccgggatcccaagggccaaagggagagaggggcaacccagggagacag
gcctacggcatagagggtcaaccaggaagaccaggcttacctggaccacctggaactccc
ggacctcccggaccttccgggtcacctcttatcgtagattttttcaacgaagtatcggga
ccgccaggaccaccaggaggtcaaggaccacctggagctcgaggatataagggacgcaaa
ggggagctgggtgactgtcaatgcctcggaggaggcaccttgggtgagattggacccccg
ggtcctcccgggtctgatggaagacctggggggtcaggaaggcaaggcgagaatggagac
cgtggctcacctgggtttggaggacagcagggaacacctggtcgtccaggcgagaggggt
ttctttgggcgtaaaggcgagaagggttctccttactacccaagattcagccaggcgatc
aagggtgaaatggggtcccggggccctcaaggcccccctggagaaatgggccgatctggg
agagatggactgcctggtttcccaggacaacctgggcctcctgctgatgattttggttat
ggaattgtcggggacaaaggattcccaggactcccagggccaaaaggtcgtgtcggtgaa
cctggagagaacgggattggctaccagggtaccatcggtacccgtgggtttccgggcgat
acagggccttctggtttaccgggagcaccggggtcacgtggccctaaaggtgacagctgt
gggcaggagggggttaatgatgcggagggaggcttgacactaccttgtcgtctccccggc
gaggacggagatcctggcagccgaggaacacctgggagaccagggcctaagggccaggca
ggtttcccaggtagtcccggccagcgaggctttgatggagtgaagggagagagaggaggc
cctggctttggaggtctgcccggaccacaaggttttcctggccccagaggagacgcgggg
gtcccaggtatttcaggcgagggccgtccaggggccccaggaaagaatgggctcccagga
cggccaggggaaagggggaagcggggagaggtgctgggtgcttcaccagggccacctgga
ttgcctggattccaagcagaaccaggggccaagggacagccaggaacaacaggactgtct
ggagaacaaggtattgatggccgcttcggaattcccggagccaagggcgagcgtggcaca
gatggttacgctggaatatcaggtcctcctggatttcctggagacaacatagggggtgga
ttacccggtcctcctggaccagctggaagcagaggaccatctggacctctaggctgtcaa
ggctaccctggcacaaagggattccgaggcgacccaggctttccaggccttgctgggttc
aagggaaaaccagggataccaggagccaatggccctccaggacttaggggtgttccagga
ccacccggtcctgggggaagggaaggtttccctgggggaccaggaagaaaaggtgaaagt
ggttcgcccggattggtgggtttcccaggaatgccaggtaaccctggaaggcctggtagt
caaggagtaaaaggggctccgggattctcaggaagagatggccaacctggagaacttgga
gtgacaggacttaaaggtgacagaggttaccctggtcgccctggggaacgttccccgccc
cccagtcctctgaacctggtgaatggacagaagggtgacaatggtccgaacagtcttgct
ggtttccctggacctagaggtgaaaagggtttcccggggcagcctggccgtcagggattg
cctgggcttcctggttattctgacagggctaaaggagtgccaggaagtcccggtatcacg
ggacgcccagccgggccaggctcaccaggacctagcggatctcccggtatcatcggcttc
ccaggaatgcctggacctaggggtgacgatggcgaacctggtttccctggcaacttcgga
gtccctggtcagccaggagctaaaggagtgagaggtgaatccactggcttttccgggcgt
cccggaaataaaggtgagaccggaagccgcggttacccaggtgtctcaggtgttaaaggt
gatcctggcgacagtgggcaacaaggcagccgtggattcagtggaaagaagggagaacag
ggagatccaggaagacccggactcacaggcacccctggtttcactgggcctaagggtctg
aatggatacccaggagaaaggggtcgagaaggatcaacaggccgtccgggctccactggg
ttacctggagttaaaggtgtgccgggatttcctggtcttaatgggctcaatggactggcc
gggcccaagggtctaccaggaaacccaggttacagtgaggggggtcgcactggcgcccct
ggagcagatggtctaaagggagagagaggctctttcatcccaggggtacctggatacaac
ggagtaaagggaactaaaggagagtcagggattcctggtacaacaggcttccccggtccg
cctggtcctcgtggggagacaaccagttcgaacatccctggggctctgggaaaccctgga
ctgcctgggctggatggagaatctggttaccgtggtcctcctggcccagcaggcccaccg
gggcccggtacaatccaaggagacagaggtgactccggcctgtctggcttccctggaacc
cctggtaatcgcggagatcccggagtttccggtagccctgggcgggatggcagccctgga
tttcaaggtgagaaaggtacccctgggtacagtggatccccgggacagaagggcttccct
ggagacaagggatactatggaggaaaaggacccaagggctcaaaaggttttcctgggagg
aagggactccctggttcactctaccccttcccaggtcctgagaacttgggcactggcgac
gagggtgagcctgggtccaacggactttcagggtccataggaggaccaggtagtcctggc
cgaactggcagagttggtcctaaaggacgtcctggccccgttgggaagctgggaaggaat
ggagaatccggtctggatgggccgtatggagatcctggtgctcccgggttccccggacct
actggatcacaaggtcggtctggtaaagccgggccacagggcctccccggttctgcgccc
cgcagcaggagtatcggctataccctggtgaagcacagtcagagcagccaggtgcccatg
tgcccgcaggggatgaccaggctctgggacggatacagtctgctttacgtagaggggcag
gagaaggctcacaaccaggacctcggcttggcaggctcctgtcttccccgcttcaacact
gtccccttcctgtactgtacgcccaacgagatctgctactacgccagccgcaacgacaag
tcctattggctgtccaccacggcgcccattcccatgatgccggtgggcgaggaggccatc
agccagtacatcagcaggtgctccgtgtgcgaggcctactcgcaggccgtggctgtccac
tcccaggacctcagcatccccacctgcccagctggctggcgctctctctggattggttac
tccttcctcatgcacaccgcagccggggctgagggtggcggacagtccttggtctcgcct
gggtcctgcctggaggatttccgtgccacgcccttcatcgagtgtaacggggctaaggga
acgtgtcactactttgccaacaagtacagcttctggctgaccacggtggaacccaaccgg
gagtttgaccccccgcccatggacacgctgaagggggtcaaccagcgcagccgggtcagc
cgctgccaagtatgcagcaagatcttgtag
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