Elizabethkingia sp. JS20170427COW: FGE20_01960
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Entry
FGE20_01960 CDS
T06442
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
elt
Elizabethkingia sp. JS20170427COW
Pathway
elt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FGE20_01960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elt03019
]
FGE20_01960
Enzymes [BR:
elt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FGE20_01960
Messenger RNA biogenesis [BR:
elt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FGE20_01960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
Cas3-like_C_2
Phage_integrase
P-loop_SecA
UvrD-helicase
HEM4
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCX52599
UniProt:
A0A5B7UEQ1
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All DBs
Position
438667..439959
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AA seq
430 aa
AA seq
DB search
MNFKDLQLIEPIEKAIAEQGYTSPTPIQQQAIPEVLKGKDLIGCAQTGTGKTAAFSIPIL
QNLTLKNTHHRNIKALILTPTRELAIQIEENIKAYSKYLSLKHLVIFGGVKQGAQEAALK
KGVDILVATPGRLLDFIAQGVVTLKQLEVFVLDEADRMLDMGFVHDVKRVVKLLPPKRQT
LLFSATMPEEIQKLANSMLYNPVKVEVAPVSSTAETINQSIYFVEREDKLELLTHLLKEQ
IQDSVLVFARTKHGADKIARKLQKSKISAEAIHGNKSQNARQNALNNFKTAKTRVLVATD
IAARGIDIDELKYVINFELSDVSETYVHRIGRTGRAGAEGSSISFVDGLDLINLKNTEKL
IGKKIPVIKDHPYHTDNLVVQKRDSNNKIAPAGQEKKATNPRNKNKKTAKRIKPEIGFKK
AKNAAFSKKK
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaagacctacaattaatagaacctatagaaaaagctattgcagagcaaggc
tacacctctcccactcctatccaacaacaggcaatccctgaagtattaaaagggaaagat
ttgataggttgtgcccaaacagggacaggaaaaactgcagcattctctatccccatccta
caaaacttaactttaaaaaacacccatcataggaatataaaggctttaatccttactcct
acgcgagaacttgcgatacaaatagaagaaaacatcaaagcttatagcaagtatttatct
ctaaaacatttggtgatttttggtggtgttaaacaaggtgcacaagaagctgctctaaaa
aagggtgttgacatccttgtagccaccccaggtcgtttattagattttatcgcacaaggg
gtagtcactttaaagcaacttgaagtttttgttcttgatgaagccgatagaatgcttgat
atgggatttgttcatgatgtaaaaagagtcgtaaaattactacctcccaaaaggcaaact
cttttattctcagcaaccatgcccgaggaaatacagaaattagccaactctatgttgtac
aatcctgtaaaagtagaagtagctcctgtatcatcaacagcagaaactattaaccaatct
atctattttgtggaacgcgaagacaaactggaattgcttacccatctgttaaaggaacaa
attcaagattctgttttggtatttgctcgaaccaaacacggtgctgataaaattgcgaga
aaacttcaaaaatctaaaatctctgctgaagccatacatggtaataaatctcaaaatgcc
aggcaaaatgctctcaacaacttcaaaacagcaaaaacaagagttttggtagctactgat
attgctgcgagaggtatagatatcgatgaattgaaatatgtaattaattttgagctttct
gacgtttcagaaacctatgtacaccgcattggaagaaccggaagagcaggagctgaagga
agttctatttcttttgtagatgggctagatttaatcaaccttaaaaataccgagaagctt
atcgggaaaaaaataccagttattaaagaccatccttaccataccgataatctcgtggtt
cagaaaagagattccaacaacaaaattgcacctgctggacaagagaaaaaagctactaac
cctagaaataaaaataaaaaaactgcgaaaaggataaaacctgaaataggattcaaaaag
gcgaaaaatgctgcctttagcaaaaagaagtaa
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