Elizabethkingia sp. JS20170427COW: FGE20_05855
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Entry
FGE20_05855 CDS
T06442
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
elt
Elizabethkingia sp. JS20170427COW
Pathway
elt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FGE20_05855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
elt03021
]
FGE20_05855
03019 Messenger RNA biogenesis [BR:
elt03019
]
FGE20_05855
Transcription machinery [BR:
elt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FGE20_05855
Messenger RNA biogenesis [BR:
elt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FGE20_05855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
AAA
DUF4368
S1CSD-TOTE-2
Mor
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
QCX53290
LinkDB
All DBs
Position
1296865..1298760
Genome browser
AA seq
631 aa
AA seq
DB search
MFDIENLKLKSETELSTIAKGIGLSIKRNIEPIDIVYAILDFQAINKQMVKEYIEKMEVT
SDEKAAPAPKKRGRKPSAKTNKEENLKEEIKVEDVKAEAEVAIENTPKPKKTSPGRKPKA
KVEEKTPSETENQEITEKVEKSVEIASPQNSLLRRRTKKTAAVKEEPQKVTTQEIKEAPQ
VKEEPVAEKEEILIKEPTISKQKNTKSQNQNKSSRHNRQKTNSSTEAPQNTPSEGAEEPQ
AATVAAPNQKEKIPQKKEFNFEGIVTIEGVLEILPDNYGFLRSSDFSYISSPDDVYVSTN
QIRHYGLKTGDTVKGIVRLPKEGEKYFSLQKPTEVNGRSLEFIKDRVAFEHLTPLFPQEK
FNLAGQNSTLSTRIVDLFAPIGKGQRAMIVAQPKTGKTMLLKDIANSISANHPEAYMMVL
LIDERPEEVTDMQRSVNAEVIASTFDESAEKHVKVANLVLSKAQRLVECGHDVVILLDSI
TRLARAYNTVTPASGKILSGGVDANALHKPKRFFGAARKIEGGGSLTIIATALIDTGSKM
DEVIFEEFKGTGNMELQLDRRIANKRIYPAVDLVASSTRRDDLLQDELTSQRMWILRKYL
ADMNPVEAMEFVQKQIRSTSSNEEFLMSMNK
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacattgaaaaccttaagttgaaatcggagaccgaattatcaactattgctaaa
ggcataggtcttagcataaaaagaaacattgaacctattgatatagtttatgctatttta
gatttccaagcaataaataaacaaatggttaaagagtatattgaaaagatggaagttaca
tctgatgaaaaagcagcgccagctcctaaaaagagaggaaggaagccaagcgctaagacc
aataaggaagaaaaccttaaagaagaaataaaagtagaggacgtaaaagccgaagcagaa
gttgcaatagaaaatactcccaagcctaaaaaaacttctccaggcagaaaacctaaagca
aaagtagaagaaaaaactccttccgaaacagaaaatcaggaaattaccgaaaaagtagaa
aagtctgtagaaatcgcttctcctcagaattccttattaaggagaagaaccaaaaaaaca
gcagcagtaaaagaagaacctcaaaaggttactacgcaagaaattaaagaagctccacaa
gtaaaagaagagccagttgctgaaaaagaagagattctaataaaggaacctacgatatcg
aaacaaaaaaatacgaagtctcaaaatcaaaacaaatcgtctagacataatagacaaaag
actaactcttctacagaagcaccgcaaaatactcctagcgagggtgctgaagaacctcaa
gctgcaacagtagcagcgcctaatcaaaaagaaaaaattccgcagaaaaaagaatttaat
tttgaaggaattgttactattgaaggagtcttagaaattttaccagacaattatggattt
ttaagatcttcagatttcagttatatctcatcaccggatgatgtatatgtttccaccaac
caaattcgtcattatggtttgaaaaccggagataccgtaaaaggtattgtgagacttccg
aaagaaggtgaaaaatatttctctcttcagaagcctacagaagttaacggtagaagtcta
gagtttataaaagaccgagtagcttttgagcacctaactcctctttttccacaagagaaa
tttaatttagcaggacaaaattcaacactttctaccagaatagtagatttatttgctcct
ataggtaaaggacagcgtgcaatgattgttgctcagcctaagacaggtaagactatgctt
ttaaaggatattgcaaatagtatttctgccaatcatccggaagcttatatgatggtttta
ttgattgatgaaagaccagaagaggttaccgatatgcagagaagtgtaaatgcggaggtt
atcgcttctacttttgatgaatctgctgaaaaacacgtaaaagtagccaacttggttcta
tcaaaagctcaaagattagtagagtgtggacatgatgtggttattttattagattctatt
acccgtttggcaagagcttataatacggtaacaccagcgtcaggtaagattttatctgga
ggggtagatgccaacgcccttcataagccgaaaagattttttggagccgctagaaaaatt
gagggaggaggctctctaaccattattgctaccgctcttattgatacaggatctaaaatg
gatgaagttatttttgaagagtttaaaggtacaggaaatatggagcttcagctggacaga
agaatagcaaataagagaatttatccagcggttgatcttgtagcatctagtaccagaaga
gatgatttattgcaagatgaattaacttcacaaagaatgtggattcttagaaaatatttg
gcagatatgaatcctgtagaagcaatggaatttgtacaaaaacaaataagatcgacctca
agtaacgaggaattcttaatgtcgatgaataaataa
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