Elizabethkingia sp. JS20170427COW: FGE20_06295
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Entry
FGE20_06295 CDS
T06442
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
elt
Elizabethkingia sp. JS20170427COW
Brite
KEGG Orthology (KO) [BR:
elt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
elt03009
]
FGE20_06295 (rlmD)
Enzymes [BR:
elt01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FGE20_06295 (rlmD)
Ribosome biogenesis [BR:
elt03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FGE20_06295 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
Methyltransf_11
MTS
N6_N4_Mtase
TRM5-TYW2_MTfase
Methyltransf_15
RrnaAD
PCMT
FtsJ
DOT1
Methyltransf_12
PrmA
Methyltransf_4
Methyltransf_ANTKMT
PabTrmU54_TRAM_dom
NpmA
Motif
Other DBs
NCBI-ProteinID:
QCX53374
LinkDB
All DBs
Position
1388291..1389700
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AA seq
469 aa
AA seq
DB search
MQKKKKNIILENIKLLSAGAKGVSVGKTEDGKTILVKGAVPGDLVNARVKKSKKNYIEAE
AVEIIEYSPYRVDARCKHFGVCGGCKWQDLSYEMQLQFKQDEVVNNIRRIGGIQDFKIFP
ILGSEEQYNYRNKMEFSFSNARWLTLEEVNSTEEISERNALGFHIPGQWSKILDLEECFL
QEEPSNEIRLAVKQYALEHNLAFYDVRNQEGFLRTLMLRQNSKGEWMVLIQLYEENEVER
VKLLDFLLQKFSAIKTLLYAINPKGNDSVYDLDIQTYYGEGFLYEEMDGLKFKIGPKSFF
QTNYKQALELYRKTLEFAEIQPDHVVYDLYTGTGTIAQYVARNAKQVIGIEAVQEAIDAA
KEHAALNGLDNCTFYCGDMKDIFNEEFLATHPKADVLITDPPRDGMHAKVVEQILNLSPE
RIVYVSCNSATQARDLDMLKETYQLVKILPVDMFPQTHHVENIALLIKK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaagaaaaagaagaatattattcttgaaaacatcaaactcctttcagccggtgcg
aaaggagtttctgttggtaaaacagaagatggtaaaaccattttggtgaaaggtgctgtg
cccggagatctggtaaatgctagagtgaaaaaatctaaaaaaaactacatcgaagcggag
gcagtagaaattattgaatattctccttaccgtgtagatgctcgctgcaagcatttcgga
gtttgtggaggttgtaaatggcaggatttaagttatgaaatgcaacttcagtttaaacaa
gatgaagtggtgaataacatccgtaggattgggggtattcaggattttaaaatttttcct
atcttgggttctgaagagcaatacaattaccgaaataaaatggaattttccttctccaac
gctcgttggttaactttggaggaagtgaattctacagaggaaatttcagagagaaatgct
ttaggtttccacattccaggacaatggagtaagattttagacttggaagaatgcttcctt
caggaagaacctagtaatgaaataagacttgccgtaaagcaatatgctttggaacacaac
ttggcattttatgatgttaggaatcaagaaggtttcttaagaaccttgatgcttcgccaa
aactcgaaaggagagtggatggtgcttattcagttatatgaagaaaacgaagtagagagg
gtaaagttattagatttccttttacaaaagttcagtgcaattaaaaccttattgtatgca
attaaccctaaagggaatgatagcgtatatgatttggatatacaaacttactacggagaa
ggtttcttgtatgaagaaatggatggattgaagtttaaaataggacctaaatccttcttc
caaaccaattataaacaagctctagagttgtacagaaaaactttagaatttgcggaaata
caacccgaccatgtggtgtatgacctttatactgggacaggaactattgcacagtatgtg
gcgagaaatgcaaagcaagtaataggaatagaagcagtacaagaagctatagacgcagca
aaagaacacgcggctctcaatggcttagacaattgtactttctactgtggagatatgaag
gatatctttaatgaagaattcctagcaactcaccctaaagcagatgtattaattacagac
cctccaagagacgggatgcacgctaaagtggttgagcagatattgaatctttctcctgaa
cgcattgtttatgtaagctgtaattcggcaactcaggcaagagatttggatatgctgaag
gaaacttatcagcttgttaaaatcctaccagtggatatgttcccacaaacccaccacgta
gaaaatatagcccttcttattaaaaaataa
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