Elizabethkingia sp. JS20170427COW: FGE20_09860
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Entry
FGE20_09860 CDS
T06442
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
elt
Elizabethkingia sp. JS20170427COW
Pathway
elt03420
Nucleotide excision repair
elt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
elt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FGE20_09860
03430 Mismatch repair
FGE20_09860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
elt03400
]
FGE20_09860
Enzymes [BR:
elt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FGE20_09860
DNA repair and recombination proteins [BR:
elt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FGE20_09860
MMR (mismatch excision repair)
Other MMR factors
FGE20_09860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Viral_helicase1
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
ResIII
DEAD
DUF1840
Motif
Other DBs
NCBI-ProteinID:
QCX54017
LinkDB
All DBs
Position
complement(2196539..2198851)
Genome browser
AA seq
770 aa
AA seq
DB search
MDYLKGLNPAQYEAVTTIEGPLMVLAGAGSGKTRVLTTRIAHLIQNGIDPFNILALTFTN
KAAKEMKERIAKVVGNSDAKSIWMGTFHSVFARILRMEAHYLGFPSNFTIYDTQDSLNVI
KKVLKEMSIDSDLYKPKKVMNRISQYKNNLITVNAYFNNPEIMETDENANMKFMGDIYKK
YVETCFKSGAMDFDDLLLRTNELLTRFPDVLAKYQDRFRYIMVDEYQDTNHSQYLIIKAL
ASRFENICVVGDDAQSIYSFRGANIYNILNFKKDYPEAITVALEQNYRSTQNIVNAANHI
IAKNQNQFKKNVFSANEEGDKIKVYRSLSDADEANFVASQILENSMRNQRKFGEFAILYR
TNSQTRAFEDALRRKNIPYKVYGGLSFYQRKEIKDLVAYLRLLVNENDQEALLRVINYPT
RGIGETTLNKIIVTADNLGITLAEFMNNLPLYAAQAGINKGTYTKISDFWNMIKAFQVIM
KTEDAYHVAMEVAQKTQLIKHLKEDQTPEGVSRVENVQELMNSLQGFIEEQKQLEDGDSS
LSFFLENIALSSDTQDKEEDDNKVSLMTIHLSKGLEFPVVHLVGLEENLFPSFMSSSTRE
ELEEERRLFYVALTRAEKQAIFSYAISRFQWGKITDAEPSRFLSEVSTEYLEYLNPATER
RFVNRSGLSSDLFDNSAPNFVKKEPLKKISTHKKDIPANLVPVDKARINNPSGTSTEEIQ
VGDQVRHDRFGIGKVIFLDGTDPNNIKAKIEFAHNDVKNLILKFAKLTRI
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggattatttgaaaggattaaacccagcgcaatacgaagcggtaacaacaattgaagga
cctctaatggttctcgcaggagccggttctggaaaaacaagagtactcaccactcgtatc
gcccaccttatccaaaacggaatagatccttttaacatattggctttaacgtttaccaat
aaagccgcaaaagagatgaaggagcgtatcgctaaagtagtaggaaatagtgatgctaaa
agtatatggatgggaaccttccactccgtatttgcgagaatactccgtatggaagctcat
taccttggcttcccttccaactttactatttacgacacccaagattcacttaacgtaatc
aaaaaggttttaaaagaaatgtctatcgattcggatttatacaaacctaaaaaggtaatg
aaccgaatttctcagtacaaaaacaacttgattacagtaaacgcctacttcaacaacccc
gaaattatggagacggatgaaaacgccaacatgaagtttatgggagatatttataaaaaa
tatgtggaaacttgcttcaaatctggagctatggatttcgatgacttgctcttgcgtacc
aacgagctcctcactcgcttcccagatgttttggcaaaataccaagatcgtttccgatac
atcatggtagatgagtaccaagacaccaaccactcacaatatttaatcatcaaagcactc
gcttcaagattcgagaacatatgtgtcgtaggagatgatgcccagtccatttactccttc
cgtggagccaacatttacaatattctcaattttaaaaaagactatcccgaagccattact
gttgctttggaacaaaattaccgttctacccaaaatattgtaaatgctgccaatcatatc
attgctaaaaaccaaaatcaattcaaaaaaaacgtttttagtgccaatgaagaaggagat
aagattaaagtttaccgaagcctttccgatgctgatgaggccaactttgttgcttcacaa
atcttagaaaacagcatgagaaaccaaaggaaatttggtgaatttgccattctttatcgt
accaactcacaaaccagagcctttgaagacgctttgagaagaaaaaacattccgtacaaa
gtttatggaggcctatccttctaccaaagaaaggaaattaaagatttggtagcctactta
aggcttttggttaatgaaaacgaccaagaagctttgcttagagtcatcaactatcctacc
cgtggtattggtgaaaccactcttaacaaaattatcgtaacagcagacaaccttgggatt
actcttgctgagtttatgaacaatcttcctctgtacgctgcacaagcaggaataaacaag
ggaacttataccaaaatatcagatttctggaacatgattaaagctttccaagtcatcatg
aagacagaagatgcttatcatgtagcgatggaagttgcccagaaaacacaactcatcaaa
catcttaaagaagaccaaacccctgaaggagtttcaagagtagaaaacgttcaggaactc
atgaactcgttacaaggttttattgaagaacaaaagcaattagaagacggagatagtagc
ttatctttctttttagaaaatattgcactttcttcagacacccaagataaagaagaggac
gacaacaaagtttctttaatgaccatccacctctccaaagggttggaattccctgtagta
cacctcgttgggctagaggaaaaccttttcccttctttcatgagctcttctacccgagag
gagttggaagaagaaagaagactcttctacgtagccctaacacgagcggaaaaacaagct
attttctcctatgcaatttctagattccaatggggaaaaattaccgatgccgaacctagt
cgctttttaagcgaagtaagtaccgaatacttagaatatctaaacccagctacagaaagg
cgttttgtgaatcgctcagggttatcttcggatttatttgataattctgctcctaacttt
gttaaaaaagaacctcttaaaaaaatatctacccacaaaaaagatattcctgccaattta
gtccctgttgataaagcacggattaacaatccctcaggaacatctacagaagaaatacaa
gttggagaccaggttcgccatgatcgctttggtataggaaaagtaattttcttagacggt
acggatcctaataatattaaggcaaaaatagaatttgcccataacgatgttaaaaattta
attttaaaattcgcaaagcttacgagaatttaa
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