Escherichia coli UM146: UM146_23545
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Entry
UM146_23545 CDS
T02000
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
elu
Escherichia coli UM146
Brite
KEGG Orthology (KO) [BR:
elu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elu03019
]
UM146_23545
Enzymes [BR:
elu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
UM146_23545
Messenger RNA biogenesis [BR:
elu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
UM146_23545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
AAA_22
HA2_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADN74028
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Position
4928900..4931329
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AA seq
809 aa
AA seq
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MSSLPVAAVLPELLAALDGASQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA
ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV
ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS
FPVERRYLPLPAHQRFDEAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV
LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP
RTGLTRLVTQRVSQASMTQRAGRAGRLEPGICLHLIAKEQAERAAAQSEPEILQSDLSGL
LMELLQWGCSDPAQMSWLDQPPTVNLLAAKRLLRMLGALDGERLSAQGQKMATLGNDPRL
AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG
GEADSSLIAPLLARAYADRIARRRGQDERYQLANGMGAMLDADDALSRHEWLIAPLLLQG
SASPDARILLALPVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLMVKVQPL
AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAT
LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWVMQQRLDSELPAHYTVPTGSRIAIRYH
EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSAFWKGAYREVQ
KEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtcgttgcccgttgctgccgtcttacctgagttacttgctgccctcgatggtgca
tcgcaggtgttattaagtgcgccgaccggggccgggaaatcaacctggctgccgctgcaa
ctgctggcgcatcccggcattaacgggaaaattatcctgctggagccgcgtcgtctggcg
gcgcgtaacgttgcgcaacgactggcggagctgcttaacgaaaagccaggcgataccgtt
ggctaccggatgcgtgcgcaaaactgcgtcgggccgaatacccgcctggaagtggttacc
gaaggcgtgctgacgcggatgatccagcgtgacccggaactgagcggtgttggattggtg
atccttgatgaatttcatgagcgcagcttgcaggcggatttggcgttggcgctgttactc
gatgtgcaacaaggtctgcgtgatgaccttaaactgctgattatgtcggctacgctggac
aacgaccgcttgcagcaaatgctgccagaagcgcccgtcgtcatctcagaagggcgctcg
tttccggttgaacgccgttatttgccgctgcccgctcatcagcgttttgacgaagccgtc
gcggttgccaccgccgaaatgctgcgtcaggaaagtggatcattactgttatttttacct
ggcgtcggagaaattcagcgtgtgcaggaacaactggcttcacgcatcggcagtgatgtg
ttgctctgcccgctgtatggcgcgttgtcgctgaacgatcagcgaaaagcgatcctcccg
gcaccgcaagggatgcgtaaagtggtgctggcgaccaatattgctgaaaccagtttaacc
atcgaaggtattcgtctggtggtggattgtgcccaggagcgtgtggcgcgttttgatccg
cgtacagggcttacgcggctggttactcaacgcgttagtcaggcgtcgatgacgcaacgt
gccgggcgtgccgggcgtctggagccgggtatctgcctgcatttaatcgccaaagaacaa
gcagaacgcgctgccgcacaaagtgaaccggagatcttacaaagcgatctttccggtttg
ctgatggaattactgcaatggggatgcagcgatccggcgcagatgagctggctggatcaa
ccgccaacggtgaatctactggccgcgaaacgcctgttacggatgctgggggcgctggac
ggtgaacggcttagtgcgcaagggcaaaaaatggcaacgctgggtaacgatccgcgttta
gcggcaatgctggttagcgcgaagaacgacgacgaagctgctaccgcggcaaaaattgcc
gccattctcgaagagccgccacggatgggcaatagtgacctgggcgtggcgttttcgcgc
aatcaacccgcctggcagcaacgtagtcagcaactgttaaaacgcttaaacgtacgcggc
ggtgaggcagacagttcgcttatcgcgccgctacttgccagagcgtatgccgatcgcatt
gctcgtcgccgtgggcaagatgaacgctatcaactggcgaacggcatgggggcgatgctc
gatgccgacgatgcgctaagccgccacgaatggttgatcgcaccgttattattgcagggc
agcgcctcaccggatgcacggattttactggcgctgccggtcgatattgatgagttagta
caacgctgcccgcagctggtacagcagtctgacactgtggagtgggatgacgcgcaaggt
acgctgaaagcctggcgtcggctgcaaattggtcagttgatggttaaagtgcaaccgctg
gcgaaaccctcggaagacgagttgcatcaggcgatgcttaacggcattcgtgataaaggt
ttaagcgtgctcaactggacggcggaagcggaacagctacgcttgcgtttgttatgcgcc
gcaaagtggttgccggaatatgactggccagcggttgatgatgaaagtttgttggcgacg
ctggaaacgtggctactgccgcatatgacaggcgtacattcgctacgcggcctgaaatca
ctcgatatttatcaggcactgcgtggattacttgattgggtaatgcagcaacgtctggat
agtgaattgcctgcgcattacactgtgccgacgggaagccggatcgccattcgttaccat
gaagataacccgcccgcgctggcggtgagaatgcaggagatgtttggtgaggccactaat
ccgactatcgcccaggggcgcgtaccgttggtgctggagttgctttcccctgcccaaagg
ccgctgcaaatcacgcgtgatttgagcgccttctggaaaggagcgtaccgtgaggtgcaa
aaagagatgaaagggcgttatcccaaacatgtctggccggacgacccggcaaacaccgca
ccgacgcgacgaacgaaaaagtattcgtga
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