Ereboglobus luteus: CKA38_05905
Help
Entry
CKA38_05905 CDS
T09773
Name
(GenBank) 3'-5' exonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
elut
Ereboglobus luteus
Pathway
elut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKA38_05905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elut03019
]
CKA38_05905
03016 Transfer RNA biogenesis [BR:
elut03016
]
CKA38_05905
Enzymes [BR:
elut01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CKA38_05905
Messenger RNA biogenesis [BR:
elut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CKA38_05905
Transfer RNA biogenesis [BR:
elut03016
]
Prokaryotic type
tRNA degradation factors
CKA38_05905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_HELZ2
S1
OB_Dis3
VTT_dom
Motif
Other DBs
NCBI-ProteinID:
AWI08848
UniProt:
A0A2U8E1U2
LinkDB
All DBs
Position
complement(1598919..1601177)
Genome browser
AA seq
752 aa
AA seq
DB search
MKLRDRILAHLRQRHYRPQDIKALGHSLALNKKERNSLKFEIRQLLSKGSIVHVQGDRLA
LAGEDDTRTGKIMFRQGGSAFVILDPLPGRAGANAIDEPAIQIAPEDTGVALHGDKVLVK
ISPQMSRARNGRPPEPTGRVVSVAERESNTVVGNLTRIRNKFYVNVDDPRFVQDIAVGDP
AASGIKPVPGPGDKVVVALAEWTARHKPLEGKITQCLGKTFEPGAELAGILIKHNLDPKF
PADVEREVAALPSEVAATQLPGRLDYRDTPTFTIDPDDAKDFDDALSIETLDNDETRVGI
HIADVSNYVRPGTSLDREARKRGNSTYLVGTVIPMLPQKLSNGLCSLVEGQDRLCKAVFL
TFDKKLRITNTTFASTVIRSRKRLTYKQAYAFMFENSIAKIRALPVPPAHQTGSTGRALK
ELTDLELVDLQHWLRSLWKIAAKLRRERMAHGSLDLDMPETKIFVDEKGYADRLERIEND
ESHQLIEEFMLAANEAVARLTRAHKLVSLYRVHDEPDEDKLIEYQKVLATAGVEAGDLTQ
RKEIVKVLAALEKHPQGYVLRSQLLRSLKKACYRATPDGHYGLAKKDYTHFTSPIRRYSD
LVVHRVLAYYLIKHAGHPVPADYKFGYSAGSMASLGEHLSLTETNSAEAERESVKIKTLE
FFERELSKKKKTKFDAVITDVRGAGLFIELTESMSFGFINKDSFAGDVYFPNASNTAFVG
RKTKKYLKVGEHITVVVKKVDRFKRQMDFAMV
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttcgcgaccgcatactcgcacatctgcgccagcgccattacaggccgcaggac
atcaaggcgctcgggcactcgctcgcgctcaataaaaaggagcgcaactcgctcaaattt
gaaatccgccagctcctctccaagggcagcatcgttcacgtgcagggcgaccggctcgcg
ctcgcgggcgaggacgacacgcgcacgggcaaaatcatgttccggcagggcggctcggca
tttgtcattctcgacccgctgcccggacgcgccggcgcaaacgccatcgacgaacccgcc
atccaaatcgcgcccgaggacaccggcgtcgcgctccacggcgacaaggtgctcgtgaaa
atctcgccgcaaatgtcgcgcgcgcgcaacggccgtccgcccgagcccaccgggcgcgtc
gtcagcgtcgccgagcgcgagagcaacaccgtcgtcggcaacctcacgcgcatccgcaac
aaattctatgtcaacgtggacgatccgcgcttcgtgcaggacatcgccgtcggcgatccc
gccgcgagcggcatcaaacccgtgcccggaccgggtgacaaagtcgtcgtcgcactcgcc
gaatggaccgcgcgccacaaaccgctcgagggcaaaatcacgcaatgcctcggcaaaacc
ttcgagccgggcgcggagctcgcgggcattctcataaaacataatctcgacccgaagttt
cccgccgacgtcgagcgcgaagtcgccgcgcttccttccgaggtcgccgcgacgcaactt
cccgggcggctcgactaccgcgacacgccgacgttcaccatcgaccccgacgacgcgaag
gatttcgacgacgccctctccatcgagacgctcgacaacgacgagacgcgcgtcggcatt
cacatcgccgacgtttccaactacgtgcgccccggcacctcgctcgatcgcgaggcgcgg
aaacgcggcaactccacctacctcgtcggcaccgtcatcccgatgctgccgcaaaaactc
tccaacggactttgctcgctcgtcgaggggcaggaccgcctctgcaaggcggtctttctc
accttcgacaaaaaactccgcatcaccaacacaacctttgccagcacagtcatccgctcg
cgcaagcgcctcacctacaaacaggcctacgcgttcatgtttgaaaacagcattgcgaaa
atccgcgcgctccccgttccgcccgcgcaccagaccggctcgaccggacgcgcgctcaag
gaactgaccgacctcgaactcgtggacttgcagcactggttgcgcagcctctggaaaatc
gccgccaagctccgccgcgaacgcatggcgcacggctcgctcgacctcgacatgcccgaa
acaaaaatcttcgttgatgaaaagggctacgccgaccggctcgagcgcatcgagaacgac
gaaagccaccagctcatcgaggagttcatgctcgccgccaacgaagccgtcgcgcgcctc
acgcgcgcgcacaagctcgtttcgctctaccgcgtgcacgacgaacccgacgaggacaaa
ctcatcgaataccaaaaggttctcgccaccgccggcgtcgaggccggcgacctcacgcag
cgcaaggaaatcgtcaaggtgctcgccgccctcgagaaacacccgcagggctacgtgctc
cgcagccagctcttgcgcagcctgaaaaaagcctgctaccgcgccacacccgacggccat
tacgggctcgcgaaaaaggactacacacacttcacctcgcccatccgccgctactccgac
ctcgtcgtgcaccgcgtgctcgcgtattacctcatcaagcacgccgggcatcccgttccc
gccgattacaaattcggctacagcgccggcagcatggcctcgctcggcgagcacctcagc
ctcaccgaaaccaacagcgccgaggccgagcgtgagagcgtgaagatcaagacactcgaa
tttttcgagcgcgaactctccaagaaaaagaaaaccaagtttgacgcggtcatcaccgac
gtgcgcggcgcgggtctcttcatcgagctgaccgagtcgatgagcttcggcttcatcaac
aaggacagttttgcgggtgacgtttatttcccgaacgcgagcaacacggctttcgtcggg
cgcaaaaccaagaaatacctcaaggttggcgaacacatcaccgtcgttgtgaaaaaagtg
gaccgcttcaaacgccagatggatttcgcgatggtatga
DBGET
integrated database retrieval system
