Escherichia coli W: ECW_m3678
Help
Entry
ECW_m3678 CDS
T02002
Symbol
rtcB
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
elw
Escherichia coli W
Brite
KEGG Orthology (KO) [BR:
elw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
elw03016
]
ECW_m3678 (rtcB)
Enzymes [BR:
elw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ECW_m3678 (rtcB)
Transfer RNA biogenesis [BR:
elw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ECW_m3678 (rtcB)
Prokaryotic type
tRNA splicing ligases
ECW_m3678 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Trm732_C
Motif
Other DBs
NCBI-ProteinID:
ADT77025
UniProt:
E0IZV2
LinkDB
All DBs
Position
complement(3755247..3756473)
Genome browser
AA seq
408 aa
AA seq
DB search
MNYELLTTENAPVKMWTKGVPVEADARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTALTAEDLPENLAELRQAIETAVPHGRTTGRCKRDK
GAWENPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDESDQV
WIMLHSGSRGIGNAIGTYFIDLAQKEMQDQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQ
LFASLNRDAMMENVVTALQSVTQKTVRQQQTLAMEEINCHHNYVQKEQHFGEEIYVTRKG
AVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVEDQIRA
TAHVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEVIYTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgaattactgaccactgaaaatgccccggtaaaaatgtggaccaaaggcgtg
ccggtagaggccgatgcgcgtcagcaacttattaatacggcgaagatgccgtttattttc
aaacatattgcggtaatgcctgatgtacacctgggtaaaggttccaccattggtagcgtg
atcccgaccaaaggggcgattattccggcggcggtgggcgtggatattggctgtggaatg
aacgcgctgcgtaccgcgttaacggcggaagacctgcctgaaaacctggcagagctgcgt
caggcgattgaaacggccgtgccgcacgggcgtaccactggccgttgtaaacgtgataaa
ggtgcctgggaaaatccacctgttaacgtcgatgctaaatgggctgagctggaagccggt
tatcagtggttaacgcaaaaatatccgcgtttcctgaataccaataactataaacatctg
ggaacgctgggaacgggtaaccattttattgaaatctgtcttgatgagtcggatcaggtg
tggattatgctgcactccggttcacgcggaattggtaacgccatcgggacttactttatc
gatctggcgcaaaaagagatgcaggaccagcttgaaacgttgccgtcgcgtgatctggcg
tactttatggaaggtacggaatactttgatgattacctgaaagcggtggcctgggcgcag
ctttttgccagccttaaccgcgatgcaatgatggaaaacgtagtaacagcgttgcagagc
gttacgcagaaaacggtaagacaacagcaaacgctggcgatggaagagatcaactgtcac
cacaactatgtgcaaaaagaacagcactttggcgaagagatctacgtgacgcgtaaaggc
gcggtgtctgcgcgtgctggtcaatatggaattattcccggttcgatgggagcgaaaagc
tttatcgtccgtgggctgggaaatgaagagtcgttctgttcgtgcagccacggtgccggg
cgggtaatgagccgtactaaagcgaaaaaactgttcagcgtggaagatcaaattcgtgcc
accgcgcatgtggaatgccgtaaagatgccgaagtgatcgacgaaatcccgatggcgtat
aaagatattgatgcggtgatggcggcacaaagcgatctggtggaagttatctataccctg
cgtcaggtggtgtgcgtaaaaggataa
DBGET
integrated database retrieval system
