Escherichia coli O157 H7 Xuzhou21 (EHEC): CDCO157_0150
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Entry
CDCO157_0150 CDS
T02122
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
elx
Escherichia coli O157:H7 Xuzhou21 (EHEC)
Brite
KEGG Orthology (KO) [BR:
elx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elx03019
]
CDCO157_0150
Enzymes [BR:
elx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CDCO157_0150
Messenger RNA biogenesis [BR:
elx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CDCO157_0150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
HA2_N
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFJ27200
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Position
166382..168856
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AA seq
824 aa
AA seq
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MLQCGAKNVNPLERFVSSLPVAAVLPELLTALDYAPQVLLSAPTGAGKSTWLPLQLLAHP
GINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLT
RMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQ
QMLPEAPVVISEGRSFPVERRYLPLPTHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEI
QRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR
LVVDCAQERVARFDPRTGLTRLITQRISQASMTQRAGRAGRLEPGICLHLIAKEQAERAT
AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPTVNLLAAKRLLQMLGALDGERLS
AQGQKMAALGNDPRLAAMLVSAKSDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAW
QQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDADDA
LSRHEWLIAPLLLQGSASPDARILLALPVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAW
RRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAGKWLP
EYDWPAVDDESLLATLETWLLPHMAGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPA
HYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQIT
RDLGAFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgctacaatgtggcgcgaagaatgttaaccctctggagcgttttgtgtcgtcgttgccc
gttgctgccgtgttacctgaattacttaccgctctcgattatgcgccgcaggtattatta
agtgcgccgaccggggccgggaaatcaacctggctgccgctgcaactgctggcgcatccc
ggcattaacgggaaaattatcctcctggagccacggcgtctggcggcgcgtaacgtcgcg
caacggctggcggagctgcttaacgaaaagccaggcgataccgttggctaccggatgcgt
gcgcaaaactgcgtcgggccgaatacccgcctggaagtagttaccgaaggcgtgctgacg
cggatgatccagcgtgacccggaactgagcggtgttggattggtgatccttgatgaattt
catgagcgtagcttgcaggcggatttggcgttggcgctgttactcgatgtgcaacaaggt
ctgcgtgatgaccttaaactgctgattatgtcggctacgctggacaacgaccgcttgcag
caaatgctgccagaagcgcccgtcgtcatctcagaagggcgctcgtttccggttgaacgc
cgttatttaccgctgcccacgcatcagcgttttgacgatgccgttgcggtagccaccgct
gaaatgctgcgtcaggaaagcggatcattactgttatttttacctggcgtcggagaaatt
cagcgtgtgcaggaacaactggcttcgcgcatcggcagtgatgtattgctctgcccgctg
tatggcgcgttgtcgctgaacgatcagcgaaaagcgatcctcccggcaccgcaagggatg
cgcaaagtggtgctggcgaccaatattgctgaaaccagtttaaccattgaaggtattcgt
ctggtggtggattgtgcccaggaaagggtggcgcgttttgatccgcgaacagggcttacg
cggttgattactcagcgaatcagtcaggcgtcgatgacgcagcgtgccgggcgcgccggg
cgtctggagccgggtatctgcctgcatttaatcgccaaagaacaagcagaacgcgctacc
gcgcaaagtgaaccggagatcttacaaagcgatctttccggtttgctgatggaattactg
caatggggatgcagcgatccggcgcagatgagctggctggatcaaccgccaacggtgaat
ctactggccgcgaaacgtctgttacaaatgctgggggcgctggacggtgaacggcttagt
gcgcaagggcaaaaaatggcagcgctgggtaacgatccgcgtttagcggcaatgctggtt
agcgcaaagagcgacgacgaagctgctaccgcggcaaaaattgccgccattctcgaagag
ccgccacggatgggcaatagtgacctgggcgtggcgttttcgcgcaatcaaccagcctgg
cagcaacgtagtcagcaactgttaaaacgcttaaacgtacgcggcggtgaggcagacagt
tcgcttatcgcgccgctacttgccggggcgtttgccgatcgcattgctcgccgccgtggg
caagatggacgctatcaactggcaaacggcatgggggcgatgcttgatgccgacgacgcg
ctaagtcgccacgaatggttgatcgcgccgttattattgcagggcagcgcctcgccggat
gcgcggattttactggcgttaccggtcgatattgatgaattagtacaacgctgtccgcag
ctggtgcagcaatctgacaccgtggaatgggatgacgcgcaaggtacgctgaaagcctgg
cgtcggctgcaaatcggtcagttgacggtgaaagtgcagccgttggcgaaaccgtcagaa
gacgagttgcatcaggcgatgcttaacggcatccgtgataaaggtttaagcgtgctcaac
tggacggcggaagcggaacagctacgcttgcgtttgttatgcgccggaaagtggttgcca
gaatatgactggccagcggttgatgatgaaagtttgttggcgacgctggaaacgtggctg
ctgccacatatggccggtgtacattcactacgcggcctgaaatcactcgacatttatcag
gcactacgcggattacttgattggggaatgcagcaacgtctggatagtgaattgcctgcg
cattacactgtgccgacgggaagccggatcgccattcgttatcatgaagataacccgccc
gcgctggcggtgagaatgcaggagatgtttggtgaggccactaatccgacgatcgcccag
gggcgcgtgccgctggtgctggaattgctttcacccgcccaaaggccgctgcaaatcacg
cgtgatttgggggccttctggaaaggggcgtatcgtgaggtgcaaaaggagatgaaaggg
cgttatcccaaacacgtctggccggacgacccggcaaacacggcaccgacgcgacggacg
aaaaagtattcgtaa
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