Escherichia coli O157 H7 Xuzhou21 (EHEC): CDCO157_0853
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Entry
CDCO157_0853 CDS
T02122
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
elx
Escherichia coli O157:H7 Xuzhou21 (EHEC)
Pathway
elx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDCO157_0853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elx03019
]
CDCO157_0853
Enzymes [BR:
elx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDCO157_0853
Messenger RNA biogenesis [BR:
elx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDCO157_0853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AFJ27901
LinkDB
All DBs
Position
954249..955616
Genome browser
AA seq
455 aa
AA seq
DB search
MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL
QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK
RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI
GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
EKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGGRGQQQPRRGEGGAKS
ASAKPAEKPSRRLGDAKPAGEQQRRRRPRKPAAAQ
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgattctttgggtttaagccctgatatcctgcgcgccgttgccgagcagggt
taccgtgaacccacccctattcagcagcaggcgatccctgcggtgctggaaggccgcgac
ctgatggctagcgcccagaccggcaccggcaaaacagcgggctttacgctgccgctgttg
caacacctgatcactcgccagccgcacgccaaagggcgtcgtccggtacgtgcgctcatt
cttaccccgacccgtgaactggcggcgcagattggcgaaaacgtccgtgattacagcaaa
tacctgaacattcgttcgctggtggtgtttggcggtgtcagcattaacccacaaatgatg
aagttgcgcggcggcgttgatgtgctggtggcaacgccgggacgtttgctggacctggaa
catcagaatgcagtgaagctggatcaggttgaaatcctcgtcctcgatgaagctgaccgc
atgctcgacatgggctttatccacgatatccgtcgcgtgttaacaaaactacctgcgaag
cgccagaacctgttgttctccgcgaccttctctgacgatattaaagccctggcggaaaaa
ctgttgcacaacccgctggaaatagaagtggcacgccgcaataccgcgtctgatcaggtg
acccagcatgttcactttgttgataagaaacgcaagcgcgaattgctgtcgcacatgatt
gggaaagggaactggcagcaggtgctggtgtttacccgtaccaaacatggcgctaaccat
ctcgctgaacagcttaataaagatggcatccgtagtgcggcgatccacggtaataaatcg
caaggtgcgcgtacccgtgcgctggccgattttaaatcgggcgatattcgtgtactggtg
gcaactgacatcgctgcgcgcggtctggatatcgaagagttgccgcacgtcgtcaactat
gaactgccaaacgtaccggaagattatgtccaccgtatcgggcgtactggccgtgcggcg
gcaactggcgaagcattgtcgctggtgtgtgttgatgaacacaaactgctgcgtgatatc
gaaaaactgctgaaaaaagagatcccgcgcattgcgattccgggttatgagccggacccg
tcaatcaaagccgaaccgatccagaacggtcgccagcaacgtggcggcggcggtcgtggg
caaggtggtggtggtcgcggtcaacagcaaccacgccgtggagaaggtggtgcgaaatca
gctagcgcgaagcctgcagaaaaaccatctcgtcgtcttggcgatgccaaaccggcaggc
gaacaacaacgccgtcgccgtccgcgtaaacctgccgctgcgcagtaa
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