Epinephelus lanceolatus (giant grouper): 117245661
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Entry
117245661 CDS
T07331
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely04382
Cornified envelope formation
ely04510
Focal adhesion
ely04512
ECM-receptor interaction
ely04518
Integrin signaling
ely04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117245661 (col4a6)
04518 Integrin signaling
117245661 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117245661 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117245661 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117245661 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ely04147
]
117245661 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
ely00536
]
117245661 (col4a6)
Exosome [BR:
ely04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117245661 (col4a6)
Glycosaminoglycan binding proteins [BR:
ely00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117245661 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117245661
NCBI-ProteinID:
XP_033465034
LinkDB
All DBs
Position
20:complement(21193345..21331239)
Genome browser
AA seq
1697 aa
AA seq
DB search
MKFLICVVAVALAVRSAHGGVGKSDEPCGGQDCSGGCRCNPEKGSRGRPGPLGEVGQSGP
EGPRGGPGPTGPKGEKGHIGLKGPSGPKGDKGPMGVPGFQGSDGVPGHPGQEGGRGPPGV
DGCNGTRGEPGAPGYGTGGPGYPGPAGPNGLKGQKGEPRYISDDGVSSIPGLPGIDGQPG
IIGPDGPPGYSGPRGPEGYPGPPGPPGLPGPMGSRSDGYEGEKGDKGDVGLPGPSGTPGD
GSLTSEQTLTIYKGSKGEPGRKGIRGYPGNPGRPGPFGYRGEYGEKGIPGYPGARGPPGF
NGPPGSPGQQGLRGVPGYPGQEGYIGPKGDQGDPGPPGPPAYVSGQGTSVQGPTGDPGFS
GLPGAPGDQGPPGFPGPPGPPGIGGVGPGGRGSPGFPGTPGPKGEKGNPGIPAYGFEGSP
GSPGLPGPPGPPGLQGPASIPSTSTPGEPGPPGPRGPPGERGFNGFRGDPGDCACLGGGT
SGLPGLPGSPGANGSPGFPGQKGEPGDRGSPGFNGVQGPPGRAGSPGFFGRKGEKGASYY
PNLGIGVKGELGATGPRGPTGETGKPGRDGLPGFPGAPGPPGDAGYGTVGEKGFPGFPGP
KGRAGGPGEPGIGYSGTPGFRGEPGDPGISGLPGAPGLPGPKGENSCEGVNDAGEGTGQV
LPCSIPGEQGDPGFPGVPGQPGSKGEPGQPGGRGRPGFDGAKGERGDPGFGGQPGPQGFP
GPRGDPGVPGIPGQSFDGGRGKDGAPGRPGAKGQPGEVLGATPGSPGQNGLPGLPGDKGQ
PGTPGGPGLPGGDGRSGVPGLKGERGVDGYPGSPGLPGLPGEPTFGIPGLPGSPGAKGLS
GSPGCQGFPGRKGDRGDPGFPGPAGMKGTPGLPGTPGSPGPRGPPGPPGPGTVEGIPGIP
GRKGERGFPGVMGFPGLPGRPGSPGFSGGKGLPGGPGRDGLPGGPGYPGQKGERGYPGPR
GLPGVPFRSEFVERGEPGTPGSSGLPGFPGPRGDKGLPGTPGRQGLPGLPGFAEQSKGQP
GQPGFPGQPGTPGFPGPKGEAGIMGFPGMSGPRGDDGAPGLPGNPGEFGRPGGKGAPGES
YGYPGAPGPKGQPGNPGIPGGRSNDGAPGENGFPGSPGFPGAKGAPGEAGRPGIMGSPGF
PGPKGQAGYPGRRGADGPPGLPAGPGGPGAKGVPGPPGLDGLNGLGGPKGLPGTPGGSVG
GRPGAPGIPGLKGERGVSYPGGPGYPGLKGERGESGGPGRPGFPGRPGPPGPTVGSDIPG
PLGDPGLPGLDGEYGFQGPPGPPGPPGPGTAQGDRGDSGLPGFPGSPGRKGDSGIPGGPG
LPGSSGFKGGRGETGFSGGPGLKGFPGDPGFYGSKGPKGFRGRTGRKGLPGVTLPMVPRD
YERPYGEMGYPGAGGGNGAPGESGQPGIPGRPGPKGRPGSVGKLGRTGSPGLPGSIGDGG
PPGFPGPTGEQGPPGAAGRPGPPGGVGRSYSIGYTLVKHSQNSQVPMCPQGMAKLWDGYS
LLYVEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEVCYYASRNDKSYWLSTTAPIPMM
PVAEEQILPYISRCSVCEAPSQAVAVHSQDMTIPTCPPGWRSLWIGYSFLMHTAAGAEGG
GQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLTTVEPSQEFVYLPSQETLKG
GQERSKVSRCQVCSKLL
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctgatttgtgtggtagcagtcgccttggcggtgagatctgcgcacggaggt
gtggggaagtctgacgagccgtgtggtggccaggactgtagcggaggatgcaggtgcaac
ccagagaaaggcagcaggggtcgtccagggcctctcggtgaggttggtcagagcggacca
gaggggccacgtgggggcccggggcctacagggcctaaaggagagaagggccacattgga
ctaaagggaccatctggccccaaaggagacaagggacctatgggagtgccaggattccaa
ggaagtgatggagtacctggtcacccgggtcaggagggtggcagaggcccaccaggagtg
gacggttgtaacgggaccagaggagagcctggagcaccgggctatgggacaggaggacct
ggatatcctggacctgctgggcctaatgggctaaagggtcagaaaggagagcctagatac
atctcagatgacggtgtctcgagtataccaggtttaccaggaattgacggtcagccgggt
atcataggtcctgatggtccgcctggttattctggtccaagagggcctgagggatatccc
ggcccacctggtcctcccggtctcccagggccaatggggagccgtagtgacggatatgaa
ggagagaaaggagacaagggcgacgtgggtcttcccggacccagtggtactcccggcgac
gggtcgctaacaagcgaacaaactctcactatctacaaaggatctaagggtgaacctggt
cgaaagggaatcagaggataccctggcaatcctggccgacctggacctttcggctatcgt
ggtgaatacggagagaagggcattcctggataccccggtgcaagaggtcctcccgggttt
aacgggcctcctggatctccaggacaacagggactcagaggtgttccaggttaccccggg
caagaaggatacatagggcccaagggagatcagggagaccccggaccaccaggaccacct
gcatacgtttctggacaaggcacttctgttcaaggaccaacaggtgacccaggtttcagt
ggcctgcctggtgcccctggtgaccagggacctccaggattcccaggaccaccaggccca
ccaggaatcggtggagttggtccaggtggtcgtggatccccaggttttcctgggacccca
ggcccaaagggagagaaaggtaacccaggcataccagcttatggcttcgaaggaagccct
ggctcccctggactccccggccctcctggccctcctggacttcagggcccagctagtatt
ccctctaccagcaccccgggagagcctgggccacctggccccagaggaccgccgggtgaa
agaggattcaatggcttcagaggcgatcccggcgactgtgcctgtctaggtggaggcacc
tctgggttgcctgggttacccggaagtcctggagctaacggcagccccggcttccctgga
caaaagggtgagccaggtgatcgcggttcacctggctttaatggtgttcagggacctcct
ggtcgtgctggtagccctggtttctttggtcgtaagggagagaagggcgcatcttattac
cccaacctgggtatcggggtgaaaggagagctcggagcaactggacccagaggaccaaca
ggtgaaactggaaaacctggcagggatggactccctggcttccctggagcccctggaccc
ccaggcgacgctggttatggcacagttggagagaaaggtttcccagggttcccggggcct
aagggtcgtgctggcggccctggcgagcctggtatcggttatagcggaacacccggcttt
cggggagagcctggagaccccggtatatctgggctgccaggggcaccaggtttacctgga
cctaaaggtgaaaacagctgcgaaggggttaatgacgccggagagggaacgggccaagtg
ctgccatgctccatacctggcgagcaaggagaccccggcttccccggtgtaccaggacaa
ccaggttctaaaggtgagccaggacagccaggaggccgtggacgtccagggtttgatggt
gccaaaggagagagaggagaccccggttttggaggccaacctggaccacaaggtttccct
ggacccagaggagatcctggagttccaggtattccaggacagagttttgacggaggcagg
gggaaggatggtgccccagggcgtcctggagccaagggccagcctggagaggtactggga
gctacacctggttccccaggacagaatggtttaccaggactccctggagacaagggccag
cccgggacgccaggaggacctggattacctggtggtgatggacgtagtggtgttcctgga
ctgaagggagagcgtggagttgatggttatcctggtagtcccggccttcctggtcttcca
ggtgagccaacctttggcattcccggtctgcctggatctcctggcgccaagggactgagc
ggatcaccaggctgccaaggtttccccggtcgaaaaggagacagaggagacccaggtttc
ccaggacctgctggaatgaagggaactccaggactgccaggcacccctggatcaccaggg
cccaggggaccccctggacccccaggaccaggaactgtagagggaattccaggaatacca
ggaaggaagggcgagagaggtttcccaggagtgatgggtttccctggactaccaggtcgt
cctggaagcccagggttttctggagggaaaggattgcctggagggccaggaagagatgga
ctacctggcggtcccggataccccggacagaaaggtgagagaggatatcctggcccccgc
ggcttgcccggtgtccctttccgatcagagtttgtggagagaggagaacctggaacccct
ggcagtagcggccttcctggcttccctggacccagaggtgacaagggtctgccaggtaca
cctggtcgtcaaggtctgcctggacttcctggtttcgctgagcagagtaaaggacagccg
ggacagcctgggttccccgggcaaccaggaactccaggcttccccggaccaaagggagaa
gctggcatcatgggattccctggcatgtctggaccaaggggtgatgatggtgctcctggt
ttacctggcaatcctggagagttcggtcggcctggtggcaaaggtgcacccggagagagt
tatggttatcctggagcgccaggacctaaaggccagccaggaaacccaggcatcccaggt
ggacgtagcaatgatggcgcacctggtgaaaacggttttccaggaagtccaggtttccct
ggagcgaagggagctcctggtgaagcaggacggcctggaataatgggctcccctggtttc
cccgggccaaagggccaggctggctacccaggaagaagaggagcagatgggcctcctggt
ctgcctgcaggtcctggaggtcctggagccaaaggtgtgcctggaccccctggtttggat
ggacttaatggcctaggtggacctaaaggcctccctggaaccccaggtgggagtgtagga
ggtcgcccaggagctcctggtattccagggttaaagggagagagaggcgtctcctaccca
ggaggtccaggctaccctggactaaagggagagagaggagagtcaggtggtcctggacgc
ccagggttccctggtcggcccggacctcctggtcctactgtggggtcggatatccccgga
cctttgggagaccctggccttcctggactggatggagagtatggattccaaggtcctcca
ggtcctcccgggcctcctggtccaggcacagcccagggagacagaggtgactctgggctc
ccaggcttccctggctcccctggcaggaaaggagactcaggcatccctggaggccccgga
cttccaggcagctctggtttcaaaggaggacgaggtgagactggcttcagtggaggtcct
ggtctcaagggtttccccggtgatcctggtttctatggaagcaaaggaccaaagggattt
cgagggcgtactggtcgtaagggtctccccggtgtcacgctgcccatggtgccacgagat
tacgagcgaccctacggagaaatgggttatcccggtgcaggcgggggcaatggtgcccct
ggagaatctggtcagcctggaatacctggacgtccaggtcctaaaggtcgtcctggttct
gtgggcaaacttggcaggactggatctcctggtctgccaggatccatcggtgatggcgga
ccccctggtttccctggacctactggagaacaaggtccccctggtgcagctggacgtccc
ggcccccctggtggtgtcggccgcagttacagcatcggatacacgctggtgaagcacagc
cagaactcccaggtccccatgtgtcctcagggcatggccaagctgtgggacggatacagt
ctgctgtacgtggagggacaggagaaggcacacaaccaggacctcggtcagccagggtcg
tgcctccccaggttcagcaccatccccttcctgtactgctcccccaatgaggtctgctac
tacgccagccgcaacgacaaatcctactggctctccacgaccgcacccatacccatgatg
cctgtggccgaggagcagattctaccttacatcagcaggtgttctgtgtgtgaggctccg
tctcaggctgtggctgtccacagtcaggacatgaccatccccacctgtcctcctggctgg
aggagtctctggataggatactccttcctcatgcacacagcagccggcgccgagggcggc
ggtcagtccctggtgtctcccggctcctgtctggaggatttccgcgcaacgccgttcatc
gagtgcaacggggccaagggcacctgccactactttgccaacaagtacagcttctggctc
accacggtggagcccagccaggagtttgtctatttgccatcacaggagaccctgaaggga
ggccaggagcgctccaaagtcagccgctgccaagtctgcagcaagctcttgtag
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