Epinephelus lanceolatus (giant grouper): 117246061
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Entry
117246061 CDS
T07331
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
ely
Epinephelus lanceolatus (giant grouper)
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ely00536
]
117246061
Glycosaminoglycan binding proteins [BR:
ely00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117246061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117246061
NCBI-ProteinID:
XP_033465633
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All DBs
Position
20:16543694..16739752
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AA seq
708 aa
AA seq
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MEIAEARGASKCVEKMEKEVAPQKRQYCRTTVLNIISSLCSVASIAFCILLSINTADIKS
RVVDLESGNDEHTFIHAPGYSMDDFNSLIEQRVDELLSQRSYENFVKIRTARQTSPECSC
PPGPPGKRGRRGRNGEPGPPGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRL
IKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVPGLPGDPGQPGETGVMGPEGPQG
QKGSIGPPGIPGVDGLKGDVGIPGFDGVPGIKGEMGERGEKGDMGEDGPKGDTGEKGDAG
SSAAGIKGEPGEPGRSGLKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGD
HGPPGKGERGDLGPIGPKGSQGEAGIPGAKGSKGETGDKGDLGSIGPKGPPGQKGDQGAT
EIIDYNGNIQEALQGPPGPPGPMGPDGKKGDRGMPGLPGLDGERGYKGSKGDMGMPGASG
DKGTTGLPGLPGVNGVKGDKGDSGLPGPQGSSITGPPGPPGPHGPPGPMGPHGFPGPKGE
PGLHGVKGIRGEPGHKGDRGPLGLPGASGLDGKPGIRGMDGPVGPAGPAGPKGDIGEKGA
TGEPGPRGPYGLPGAAGTPGLDGLPGLRGEKGDVGERGEKGEKGKKGKKGPKGEKGEQGA
PGLDAPCPLVCPNCELGIASQLCRAAAPNTDERPVAKQIPSFHRIIAT
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgcggaggcaagaggagcatctaagtgcgtggaaaaaatggagaaagaagtg
gcgcctcagaagcgacagtattgccgcacgacagtgctgaacattatctcgtctttatgc
tcagtggcgtccatcgccttttgcattcttctgagcattaacacagctgatatcaagagc
cgggttgtggatttggagagtgggaatgacgagcacacctttatccatgcccctggctac
tccatggatgattttaattcattgattgagcaaagagtggatgagctgctctctcagcgc
tcctatgaaaattttgtcaagattcggactgccagacaaacctcacctgaatgcagctgc
cctccaggacctccgggaaagcgcggaagaagaggccgcaatggagaacctggacctcct
ggccccccaggtcccaagggtgaaaagggggatcaaggcgaccagggaccacggatggtc
ttccctaagatcaatcatggctttctttccgctgaccagcagctcataaagcggcggctc
attaagggagatcaaggacaagctggaccacctgggcctccagggccaccgggtcctcca
gggccaagggggcctccaggggacaccgggaaagacgggcccagaggtgtaccaggtcta
ccaggtgatccagggcagcctggagagacgggagtcatgggacctgaggggccacaaggg
cagaagggttcaatcgggcctcctggcatcccaggtgttgatggactgaagggggatgtt
ggcatcccaggatttgacggtgtccccggaatcaagggtgaaatgggagagcgaggtgaa
aagggcgatatgggtgaagacggaccgaaaggtgatacaggagagaagggagatgctggc
tcttcagcagcaggcatcaagggtgaacctggagagcctggacgaagtggactaaaggga
gagccaggacttccagggctgcctggactcccagggataaagggtgagcctggattcctc
ggtccccagggagagccagggcttccaggactcccaggaactaagggtgagagaggcgac
cacgggccaccaggaaagggtgaaagaggagaccttggacctattggaccaaagggttca
caaggagaggctggtatacctggtgccaaagggtcaaagggggagactggagataaagga
gacttggggtctattggaccgaagggcccccctgggcagaaaggagaccaaggagccact
gaaatcatcgactacaatggaaacattcaggaggctttacagggtcctcctggacctcct
gggccgatggggcctgacgggaagaagggcgatcgcggtatgcctggtctccctggactc
gacggtgaaagaggctacaaaggttccaaaggagacatgggaatgcctggagcttcaggg
gataaaggaacaactggtttacctggcctacctggtgtcaatggagtaaaaggagataag
ggtgattcaggtctacctgggcctcagggttcttcaatcactggacctccagggccacca
gggccccacggacccccagggcccatgggcccccatggtttccctggaccaaagggggaa
cctggtttgcacggtgtgaagggtatccgaggggaaccaggacacaaaggggatcgtggt
ccactgggtctccccggagcctccggcttggacggcaagcccggaattaggggcatggat
gggcctgtgggtccagctggtccagctgggccgaagggtgacataggtgagaaaggagca
acaggcgagccaggaccaaggggaccgtatggactacctggagctgctggaacaccaggc
ttggatgggttgccaggcttaaggggagagaaaggcgacgttggggaaagaggagagaag
ggggagaagggaaagaagggcaaaaaagggcctaagggcgagaaaggagaacagggtgcc
cctggattagatgcaccctgcccattggtatgtcctaactgtgagctgggaatcgcctcc
cagctgtgtagagcagctgccccaaacacagatgagcgccctgtggctaaacagataccc
agcttccaccgcatcatagcaacctga
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