Epinephelus lanceolatus (giant grouper): 117246829
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Entry
117246829 CDS
T07331
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03030
DNA replication
ely03420
Nucleotide excision repair
ely03430
Mismatch repair
ely03440
Homologous recombination
ely03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117246829
03420 Nucleotide excision repair
117246829
03430 Mismatch repair
117246829
03440 Homologous recombination
117246829
03460 Fanconi anemia pathway
117246829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ely03000
]
117246829
03032 DNA replication proteins [BR:
ely03032
]
117246829
03400 DNA repair and recombination proteins [BR:
ely03400
]
117246829
Transcription factors [BR:
ely03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117246829
DNA replication proteins [BR:
ely03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117246829
DNA repair and recombination proteins [BR:
ely03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117246829
MMR (mismatch excision repair)
117246829
DSBR (double strand breaks repair)
HR (homologous recombination)
117246829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Extensin_1
Motif
Other DBs
NCBI-GeneID:
117246829
NCBI-ProteinID:
XP_033466706
LinkDB
All DBs
Position
2:complement(14040267..14096488)
Genome browser
AA seq
669 aa
AA seq
DB search
MSLKLTQGAVEALFKGEEVNNPVLQVLNMRQIINGDAPPRYRLMMSDGRHSLSSFLLATQ
LNNLPEENLLVPNCLCMIKKTITNTLSDGRHVVIVLDMEILQSAEETGGKIGNPTPYNTD
GKMSSSQKMDLGTSVPAPPPSAAVPGPSYANTSTFSPPQGRGRGFVGKSPMKASPMNVSP
MKASPMTVSPMKASPTKFSPMKASPMNVSPMKASPMKGTPTKFSPMKASTSTPPGPSTKV
TPIANLNPYISKWTIKARVTNKSNIRNWSNSRGEGKLFSFEIVDESGEIRITAFNNEVDK
FFSLVEQGKVYYITKGTLKAANKQYTTLKNDYEMTLHAQSSIVPCDDTQGVPTVHCDFVP
IAELENRDKDAILDVIGVCKSAEDVSRITTKTSREVSKRALDLIDTTGKVVTVTLWGEEA
EKFDGSGQPVVAIKGARLSDFGGISLSALFSSTVMVNPDLPEAFSLRAWYDQGGFALASQ
SLTETRSVGSGAKTNWKTLSDIKNENMGNGEKADYFSCIATVLYTRKENCLYQACPTADC
YKKVIDQQNGLYRCEKCDREFPNFKYRLLLSANLADFGDNQWVTCFQETAEVLLGHNADT
LGLLRETDEAAFDEVFQKTNFTTHIFRNRVKLETYNDESRVKVTVMEVQPVDHREYSRRL
LSNIRKLAG
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaaaactcacacaaggggcagttgaagccctgttcaaaggtgaagaggtgaac
aatcctgtgctgcaggtgctgaacatgcgtcagatcataaatggcgatgcacctcccagg
taccggctcatgatgagtgatggtcggcactctctgtcttccttcctgctggccacacag
ttaaacaatctcccagaagagaacctcctggtacctaactgtctgtgcatgataaagaaa
accatcaccaacacgctgtcagatggcaggcatgtggtgattgtgttggacatggagata
ttgcagtcagccgaggaaactggaggaaagattggaaatcccactccatataatacagat
ggtaagatgtcatcgtcacagaaaatggacttgggtacctctgtcccggcgccccctccg
tctgcggcagtacctggaccctcctatgcaaacaccagcaccttctctcctccccaaggc
cgaggaagaggttttgtaggaaagtcgcccatgaaggcttcaccaatgaacgtttcaccc
atgaaggcttcaccaatgactgtttcacccatgaaagcgtcgcccacaaagttttcaccc
atgaaggcttcaccaatgaatgtttcacccatgaaagcttcacccatgaaaggcacaccc
acaaagttttcacccatgaaggctagtaccagcactcctccaggcccttcaacaaaagtg
actcctattgcaaacctcaacccctacataagcaagtggactatcaaagcccgagtcacc
aacaagtccaatatccgcaactggagtaactctagaggagagggcaagctcttctctttt
gagatagtggatgagagtggagaaatcaggatcacagccttcaacaacgaagtggacaag
tttttctctctagtggagcaaggcaaggtgtactacatcactaagggtacactgaaggcg
gccaacaaacagtacaccacactgaagaacgactacgagatgaccctacacgctcagtca
tccatcgtgccatgtgatgacactcagggtgtccccacggtgcactgtgactttgtgccc
attgcagagctggagaacagagacaaggatgccatccttgatgtgattggagtgtgtaag
agtgcagaggatgtatcccgtattaccactaagaccagcagagaagtctccaagagggcc
ctcgacttaatagacacaactggcaaagtggtgacagtcacactgtggggagaggaggcg
gagaaatttgacggctctgggcagcctgtggtggccatcaaaggagctcgcttgtctgat
ttcgggggcatctctctctctgcgttgttcagttcaacagtcatggtcaacccagactta
ccagaggctttcagtctgcgggcctggtacgaccagggaggttttgcgcttgccagccaa
tccctgacagagacgaggtcggtgggcagcggagcaaagacaaattggaaaacactgagc
gacattaagaatgaaaacatgggaaatggagagaaggcggattatttcagctgcatagcg
acagtgctgtacactcgtaaggagaattgtctataccaggcctgtccaactgcagactgc
tacaagaaggtcatcgaccaacagaatggactgtaccgctgcgagaagtgtgaccgagag
ttccccaacttcaaatacagactcctgctttctgccaacttggcagacttcggggataac
cagtgggtgacatgcttccaggagacagctgaggtcctgttaggtcacaatgcagacaca
ctgggactgctcagagaaacagacgaggctgcattcgatgaagtctttcagaaaaccaac
ttcacaactcacatctttcgaaacagggtcaagctggagacgtacaacgatgagagtcga
gtgaaggtaaccgtaatggaagtccagccagtcgaccaccgggaatacagcaggagactc
ctcagtaacatccgcaaattggccggctga
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