Epinephelus lanceolatus (giant grouper): 117246869
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Entry
117246869 CDS
T07331
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03440
Homologous recombination
ely03450
Non-homologous end-joining
ely04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117246869 (rad50)
03450 Non-homologous end-joining
117246869 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
117246869 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ely03032
]
117246869 (rad50)
03400 DNA repair and recombination proteins [BR:
ely03400
]
117246869 (rad50)
DNA replication proteins [BR:
ely03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
117246869 (rad50)
DNA repair and recombination proteins [BR:
ely03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
117246869 (rad50)
BRCA1-C complex
117246869 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
117246869 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SMC_N
AAA_15
SbcC_Walker_B
ABC_tran
zf-met
AAA_29
AAA_16
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
117246869
NCBI-ProteinID:
XP_033466773
LinkDB
All DBs
Position
2:complement(11360213..11394230)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQVISFFTPLTVLVGPNGAGKTTIIECLRYATSGELPPG
SKGGAFVHDPRDAHETDVRAQIRLLFSDVNGEKVTIQRSMSCTQKAKNYSFKSLEQVITR
MKDGEKVSLSSKCGELDREMISSLGVSKPVLNHVIFCHQEDSNWPLSEGKALKDKFDSIF
AATKYIKALETMRQLRLKQSHTVKECQVELRYLKQNKEKAQQIRETVATKEAQLTASRDS
IQQIESQIDPLENRLTDIDMKLGKVMKLDNDIKALDSRKKQMEEDNKELEETMEQVFQGS
DEQLQEIYQNHQRTVREKERRLTDCQKELERAGRECQRLNRVKADLLVEQGRLQLEADRH
TQHIKNRDTQVRSLSSYLDMEGYDRPPFSTLQLESFNRHVTQRLEQEKQTLSQVMADLQE
KEQQKQQSIDEMRDKKTGLERTVELKRDLQGKKQQELRNIRAELQRLEGSSSRLQELENE
LAKAERELQSAVQSSNVDELKAEVVELQREKAELDRTQRQLDQEMGMLNTHTTARTQMDM
LNKDKTEKEEQVRKIKSRHSEDLVSLLGHFPKKRELEDWIYSKSKEINSTRDRLAKLNKD
LASSEQNKSHIAAELRKKEQQVTGDEEKFFNVCGSQDLEQDLSKLGDDLEKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSESDLQEVISDMQSKLRLVPDKLKNTEQDLK
RKERKRDEMLALRPVRQSIVQLQEKELPELRNRLQTVNRDIERLKGDVEEQETLLGTLMS
EEDTAKACLQDISLMDRYLMDLKELERKIAQQAAKLQGVDLTRTIQQVSQEKQETQHRLD
TTSSKMELKRKLIQDQQDQIQMLKSAVNETRAEKLQLSSDLQKQQQLEEQCVEFTTEIQA
FTRDIREAKEQLSPLSVALEKLQQEKKELVERKRQKQEEGQEKINAIKEKVKAITSLERD
ITKYVDDGKDEYKEQKESELQETNTQLHEAEKHKDKITKEMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVVSKREALLKEMGNMQVLQLRQERREAERKLEELKKNRSIALGRQKG
FEEAILECRKELREDQYDKADERYKNKMITMRTTELVIKDLDLYYKALDQTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSAGVRRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLVITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSITSLSSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatagacaagatgagcatccttggggtgaggagttttgggattgaggataaa
gacaaacaagtcatctctttcttcactccactgactgtactggttggacccaacggagca
gggaaaacgactattattgagtgccttaggtatgcaacatcaggagaacttccccctgga
tctaaaggaggtgcatttgttcacgatccaagggatgcccatgagacagatgtgagagca
cagattcggctcttattcagtgacgtcaatggagagaaagtgactatccaacgctccatg
tcctgcactcagaaggcaaagaactactccttcaaaagcttggagcaggtcatcactaga
atgaaagacggtgagaaggtgagcttgtcatcaaaatgcggcgaactggatcgggagatg
atttcttcactgggtgtgtcgaagcctgtgctgaaccatgtcatcttttgtcaccaagaa
gattctaactggcccctcagcgagggcaaagcactcaaagataaatttgactccatcttc
gctgcgactaagtatatcaaagctttagagacgatgcgtcagttgcgtctcaaacagagt
catacagtcaaagagtgtcaggtggagctgcgctacctgaagcagaacaaagagaaagcc
cagcagatcagagagaccgtggccaccaaggaggctcagctgacggcctctagggacagc
atccagcagatagagagccagattgatccactggagaatcgactgaccgatatcgacatg
aaactggggaaagtgatgaagctggacaacgacatcaaggctttagacagcaggaagaaa
cagatggaggaggacaacaaggagttggaggaaacaatggaacaggtgttccagggttca
gatgagcagctgcaggagatttaccagaaccaccagaggacggtgagggagaaggagcgg
aggctgacagactgccagaaggagctggagagagccggtcgggagtgtcagagactcaac
agagtcaaggccgatctcctggtagaacaaggtcgtctgcagctggaggctgatcgccac
actcaacatatcaagaaccgcgatactcaggttcgctctttgtcgtcctatctggacatg
gagggttacgaccgcccacccttctccactcttcagcttgagagcttcaatcgtcacgtc
acacagagactggagcaggaaaaacagacactctctcaggttatggcggacctgcaggaa
aaggagcagcagaagcagcagtccattgatgaaatgagggataagaagaccggcctggag
agaaccgtggagttgaagagggacctgcagggaaagaagcagcaagaactgaggaacatc
agggcagagctgcagaggctcgagggttcatctagccgactgcaggagctggagaatgaa
ctggccaaagcagagcgtgagctgcagagcgcagttcagagctctaacgtggatgagctg
aaggccgaggttgtggagctacagagagaaaaggctgagcttgaccgcacacagaggcag
cttgaccaagagatgggaatgctcaacacacacaccaccgcccgcacgcagatggacatg
ctgaataaagacaagacggagaaggaagagcaggttcgtaagatcaagtctcgtcacagc
gaggatctggtgtcattgctgggtcacttccccaagaagagagagctggaggactggatc
tattccaagtctaaggaaatcaacagcaccagggatagactcgccaaactcaacaaggac
ctggcatcaagtgagcagaataaaagccacatcgctgctgagctacggaagaaagagcaa
caggtaaccggcgacgaagagaagttcttcaatgtgtgtggcagtcaggatctggagcag
gacctgagcaaactgggagacgatctggagaagatctccaagcaaagagccatgctagcc
ggagccacagcagtttacacccagttcatcagccagctgacagaggagagagagccctgc
tgccccgtgtgtcagcggacattcccctcagagtctgatctgcaggaagttatcagtgac
atgcagtccaagctgcgcctggtgccagacaagctgaaaaacacagagcaggacctgaag
aggaaggagaggaagagagatgagatgttggcgctcagacctgtcaggcagtccattgta
cagcttcaggaaaaagagttgcctgagttgagaaaccgcctgcagactgtgaacagagac
atagagaggctgaagggcgacgtggaggagcaggagacgctgcttggcaccctgatgtca
gaggaggacacagccaaggcctgcctgcaggacatatctctaatggacagatacctgatg
gaccttaaagagttggagaggaaaatagctcagcaggcagccaaactccagggagtagac
ctgaccagaaccatccagcaagtcagtcaagagaaacaagaaactcagcacaggctggac
accacctccagcaagatggagctgaaacgtaagctgatccaggaccagcaggatcagatt
cagatgctgaaaagtgccgtgaatgagacgagagcagagaaactgcagctgagcagtgat
ttgcagaaacagcagcaacttgaggagcagtgtgtcgagttcaccactgaaatacaggcc
tttaccagggacatcagggaagcgaaggaacagctgtcccctttgtctgtagctctggag
aagctgcaacaggagaagaaggagctggtggagcgcaagaggcaaaagcaggaggagggg
caggagaagatcaacgccattaaagagaaagtgaaggcgatcacctctttggaaagagac
atcaccaaatatgttgatgacggcaaagacgaatacaaagagcaaaaagagtctgagctt
caagaaaccaacactcagctgcatgaagctgagaagcataaagacaagataaccaaggag
atgggaaacatccgtcaggacatagacactcagaaggtccaggagcgctggttgcaggac
aacctgaccttaaggaaacgtgttgaagagttaaaggaggttgtgtctaaacgtgaggct
cttctgaaagaaatgggcaacatgcaagtcttgcagctgcgccaagaacggcgtgaagcg
gagcgcaagttggaagagttgaagaagaaccgcagtattgcgctgggtcgtcaaaaaggc
ttcgaggaggcaatactggaatgcagaaaagagctgcgagaagatcagtatgacaaagct
gatgagcgctacaaaaacaagatgatcacaatgaggacgacagagctggtcattaaagac
ctggatctctactacaaggcccttgatcaaaccatcatgaaattccacagcatgaagatg
gatgagatcaacaagataatcagagacctatggcgcagcacctacaggggtcaagatatt
gagtacgtggagatcaggtctgacgtggacgaaaactcgtctgctggagtgaggcggagg
gtttacaactacagagtagtgatggtgaaaggagacacagctttggatatgagaggacgc
tgcagtgctggacagaaggtgttggcgtccctgatcatccgtctagctctggcagagacc
ttctgtctgaactgcggcatcctggccctggatgagcccactaccaacctggaccgagaa
aacattgagtccctggcacacgccctcgtagaaatcattaagagtcgctcacgccagcgt
aacttccagctgctggtcatcacccacgatgaggactttgtggagctgctggggcggtcc
agctacatcgagcacttctaccgcatccgtaaaaaccaggaccagaactctgagatcaca
aaatgcagcatcacgtccctctcatcttatctccactaa
DBGET
integrated database retrieval system
