Epinephelus lanceolatus (giant grouper): 117247857
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Entry
117247857 CDS
T07331
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely04120
Ubiquitin mediated proteolysis
ely04137
Mitophagy - animal
ely04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117247857 (prkn)
04120 Ubiquitin mediated proteolysis
117247857 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117247857 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ely04131
]
117247857 (prkn)
04121 Ubiquitin system [BR:
ely04121
]
117247857 (prkn)
03029 Mitochondrial biogenesis [BR:
ely03029
]
117247857 (prkn)
Enzymes [BR:
ely01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
117247857 (prkn)
Membrane trafficking [BR:
ely04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
117247857 (prkn)
Aggrephagy
Other aggrephagy associated proteins
117247857 (prkn)
Xenophagy
Other xenophagy associated proteins
117247857 (prkn)
Ubiquitin system [BR:
ely04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
117247857 (prkn)
Mitochondrial biogenesis [BR:
ely03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
117247857 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
IBR_1
IBR
Motif
Other DBs
NCBI-GeneID:
117247857
NCBI-ProteinID:
XP_033468343
LinkDB
All DBs
Position
22:1684611..1695180
Genome browser
AA seq
302 aa
AA seq
DB search
MVMMMVMMMMVIMVTCLSQGPSCWEDVLLRGRIHGVCQSESCHGNEAEFYMKCASHPTSE
DDVSVALDLIMTNSREVPCIACTDVMDVVLVFQCSERHVICLDCFRRYCQTRLNERQFVH
HPVIGYSLPCAAGCVDSLIKELHHFRILGEDQYGRYLQYGAEECLLMIGGLMCPSPGCGA
GLLPPDGGRRVECDRQLGCGFIFCRDCREGYHEGVCPAEQATPIDEASQVFVVEEEASQR
GRWDQASMLLLQESTKRCPQCSVPVERNGGCMHMQCPLCRAEWCWLCGVTWNTDCMGNHW
FG
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgatgatggtgatgatgatgatggtgattatggtgacctgtctctctcagggt
ccgtcctgttgggaagacgttctcctccgaggtcgtatccatggcgtgtgtcaatcagag
agttgtcatggcaacgaagcggagttttacatgaagtgtgcgtcccatccgacatcagag
gatgatgtctccgtggcgctcgacctcatcatgaccaacagcagagaagtcccgtgtatt
gcctgcaccgacgtcatggacgtggtcctggtcttccagtgttcagagcgtcatgtgatc
tgtctggactgtttccgtcgttactgtcagacccgactcaacgagcgccagtttgttcac
catcctgtgattggctactcgctgccgtgtgccgccggctgcgtcgactctctcatcaaa
gagttacatcacttcaggattctgggagaggatcagtatgggcggtacctgcagtacggc
gcggaggagtgcctgctgatgattggaggactgatgtgtccgtcgcccggctgtggggcg
gggcttcttccacctgatggcggcaggagggtggagtgtgaccgacagctcggctgtggt
ttcatcttctgcagagactgcagggagggctaccatgagggtgtgtgtcccgcggaacag
gccacgcccatagatgaagcctctcaggtttttgtggtggaggaggaggcctctcagagg
gggaggtgggatcaagcctccatgctcctcctgcaggagtcgaccaaacgctgccctcaa
tgttcagttcctgtggagagaaacggcggctgtatgcacatgcagtgtcctctgtgcaga
gctgagtggtgttggctctgtggagtcacctggaacacagactgtatgggaaaccactgg
tttggatag
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