Epinephelus lanceolatus (giant grouper): 117247995
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Entry
117247995 CDS
T07331
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117247995 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ely03400
]
117247995 (msh6)
DNA repair and recombination proteins [BR:
ely03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117247995 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
117247995
NCBI-ProteinID:
XP_033468593
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Position
22:18813347..18822350
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AA seq
1383 aa
AA seq
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MAKQSSLFNFFTKSPPPVSKPKPSPSPAEADLPSSVQKSSSSPKEEAKQTQQQQPAKANK
VKAKTNDKSVKGGFSKLFGDKAATTKQSSNTCPFSVGSLVWAKLEGHPWWPCMVVPQPLT
GQQMRGRGRDQRIHVHFFDEPATRGWVSTKYIREYQGSDSSDAKTGGVFFSGKPIIRRAM
ELADGVMFDSPEKRLKMPICMDPSDEEEDDDEEEMEVDKSTVTDEEVSDEEEQKNEKVKS
PKVGRRSSRASTEKGNKAKRRRIIVASDSDGSDEEFKPEQAASSSEDEEEAATVSSEEEE
EESPEESEVDSPVKPAKRKRPAEKPAPAKAKILSAPSNTPKRAPAAVALDTKSRLSAFSA
PESFESQTNGSGASGGATIWDHEKLEWLQDGKRKDRRRRRQTEDDYDPTTLYVPEDFLNR
VTPGMRRWWQLKSEMFDTVIFYKVGKFYELYHMDAVVGVNEMGLTFMKGTWAHSGFPEIG
FGRFSDVLVQKGYKVARVEQTETPEMMEARCKTMAKPTKFDRVVRREVCRIITRGTQTYS
VLDGAPSESQSKFLLSLKEKAEEESSGRCRTYGVCFVDTSVGYFHVGQFPDDRHCSRLRT
LIAHFAPAEVLFEKGNPSVETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSEEDYFR
EAAGKDKDTGNDILPALIKKMTSESDSLCLTPKEGYELALSALGGCIFYLKKCLVDQELL
SLANFEEYVPVDVELEKAAGPASFFAKTRQRMVLDGVTLANLEIFQNGCGGTEGTLLERL
DTCCTPFGKRLLKQWLCAPLCNPTSIKDRLDAVDELMGAQAQATEVSDLLKKLPDLERLL
SKIHSIGTPLKSQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIISVLAPVSGES
QSTLLRQVTSLKGEKDGLFPDLSAELKRWDTAFDHQKARTTGVITPKAGFDPDFDQALTG
IKNCERELQDYLDRQKKRLGCKNMSYWGTGRNRYQMEVPDSVSERNIPEEYEVKSTKKGW
KRYVTKETERLFSELQGFEEKRDAALKDCMRRLFYNFDKNYKDWKTGVECMAVIDVLLAL
SRYSQGGDGPMTRPQVVLPESDDQVAPFLDLTGSRHPCVTKTFFGDDFIPNDVYIGCPGG
SETDEEKQHASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVDRVFTRL
GASDRIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVKELAE
KICCRTLFSTHYHSLVEDYAKSPAVRLGHMACMVENECEDPSQETITFLYKFISGACPKS
YGFNAARLASLPEEVIQSGHRKAREFERSTISLRLFKKLCQFAEDSTLGNTHFASLVQML
NTL
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctccctcttcaactttttcacaaagtctccgccgccggtgtccaag
ccgaagcccagtccctctccggccgaggcggacctgccgtcctccgtacagaagtccagc
tcctctccgaaagaagaagctaaacagacacagcagcaacaaccagccaaggccaacaaa
gttaaagcgaaaactaacgacaagtctgtgaaaggagggttcagcaaactatttggcgac
aaggccgcaacaaccaaacaaagcagcaacacatgcccattcagtgttggctcccttgtg
tgggcaaaactggagggacacccctggtggccatgcatggtagtaccccaacctctgact
ggacagcagatgaggggccgtggtcgggaccaacgtatacatgtccatttctttgatgaa
cctgctaccagaggatgggtcagcaccaaatatatccgagagtaccaaggctctgacagc
agtgatgctaaaacaggaggagtgttcttcagcggcaaacccataatccgtcgtgcaatg
gagctcgctgatggagtgatgtttgacagccctgagaaaagattaaagatgcctatctgt
atggatccgtctgatgaggaagaggatgacgatgaagaagaaatggaggttgacaagtca
acagtgactgatgaagaggtcagtgatgaggaagaacagaaaaacgagaaagtgaagtcg
cccaaggttggtcgacgttcatcccgtgcttcaacagaaaagggaaataaggccaagcgt
cgtcgcataattgtggcctcagacagcgatggctcagatgaggaattcaaaccagaacaa
gctgcctccagcagtgaggatgaggaggaagcagcaactgtgagcagtgaagaggaggaa
gaggagagccccgaagagtcagaagtagacagccccgtcaagcctgcgaagcgcaaacgt
cctgcagaaaagcctgctcctgcaaaagccaagatactttctgccccctcgaacacacca
aaacgagctccagcagctgttgcgctcgacacaaagtcccgtttgtcagccttctctgcc
ccagagagctttgagagtcagacaaacggatcaggcgccagtggaggtgcaacaatttgg
gaccacgagaagctggagtggttgcaggatggcaagaggaaagaccgccggaggcggcga
cagacagaggatgactatgatcccaccacattgtatgtgccagaagactttctaaacaga
gtcactccgggtatgcgtcggtggtggcagctcaaatctgagatgtttgacacagtcatt
ttctacaaggtggggaagttttatgagttgtatcacatggatgctgtggtcggagtcaac
gagatgggactaacgttcatgaaggggacctgggcacactcgggcttcccagagattggc
tttggacgtttttcagatgtactggtccagaaaggctacaaggtggcacgtgtggagcag
acggagaccccagagatgatggaagcacgctgtaagaccatggctaagcccacaaagttt
gaccgtgtggtacgaagagaagtgtgccgcattatcacacgtggtacccaaacctacagt
gtactggacggtgcgccctctgagagtcagagtaagttcctgctgagcttaaaggaaaag
gctgaagaagaaagctctggccgttgccgtacatatggagtctgctttgtagatacgtct
gtgggttattttcacgttggtcagttcccagacgatcgtcactgctcacgtctgcgtacc
ctgatcgcacactttgcccctgctgaagtgctgtttgaaaagggaaacccatctgttgaa
acacgcaaaatactcaaagcctctctgtcctccgctctgcaggaaggacttaatgcaggc
acccagttctgggatgctcagaagactctgaaaaccctctcagaagaagattacttcaga
gaggctgctggtaaggacaaggatacagggaatgacatccttcctgctcttataaaaaag
atgacctctgagagtgactcactgtgccttactcctaaagagggctatgagctggctctg
tcagcactgggtggatgtattttctacctgaagaaatgtctggtggaccaggagctgctc
tctttggccaactttgaagaatatgtccctgttgatgttgagctggagaaagcagctgga
cctgccagtttctttgcaaagacccgtcagcggatggttcttgatggagtgactctggca
aacttagaaatctttcagaatgggtgcggaggaacagaagggacactgctggagcgtttg
gacacctgctgtaccccgtttggcaagaggctgttgaagcagtggctctgtgctcctctg
tgtaaccccacatccatcaaggacagactggacgcagtggatgaactgatgggagctcag
gcccaggctactgaagtctcagacctgctgaagaaactcccagatttggagcgtctcctg
agtaaaatccacagcattggcactccgctgaagagccaggatcaccctgacagcagagcc
gttctctatgaggaggtcacctacagcaagcgcaagatagcagacttcctttcagcactg
gaagggttcaaaactatgcaggagatcatcagtgtccttgctccagtttcaggggaatct
caatccacattgctccgtcaagtcaccagtctgaaaggcgaaaaggatggcctcttcccc
gacctctctgctgaactcaagcgctgggatacagcctttgaccaccagaaagctcgcacc
actggtgtcatcacccccaaagctggctttgacccagacttcgaccaggctctgactgga
atcaagaactgcgagcgagagctgcaggattacctggacagacagaagaagagactcggc
tgtaaaaacatgtcctactggggaactgggcgaaaccgctaccagatggaggtgcccgac
agcgtctccgagaggaatattcccgaggagtacgaggtgaagtcgacaaagaaaggctgg
aagcggtacgtgactaaagagacggagaggctgttctcagagctgcaaggatttgaggag
aagagagacgctgcgctgaaagactgcatgaggaggctcttctacaactttgacaagaac
tacaaagactggaagactggtgtggagtgcatggcagtgattgatgtgctgctggccctg
tcacgctacagtcagggtggagatggaccgatgaccaggccacaggtggtgctgcccgaa
agcgatgaccaagtagcgcccttccttgacctcactggatcccgccacccctgtgtcacc
aagaccttttttggtgatgacttcatacctaatgatgtctacattggctgccctggtggc
agtgaaactgatgaagaaaagcagcatgcctcttgtgtcctcgtcacagggccaaacatg
ggtggaaagtctaccctcatgagacagtgtggacttgtgatcatcctcgctcagctgggt
tgctatgttcctgccgagagcctgcgcttcacaccagttgacagagtcttcactcggctg
ggagcctcagatcgcatcatggctggggagagtaccttctttgtggagctaagtgaaact
gccagcatcctgcaccacgccactaaacactcgctcgtgctcctggatgaattaggaagg
ggcacagccacatatgatggcacagcgattgccagtgctgttgtgaaggagcttgctgag
aagatctgctgtcgcaccctcttctccacacattaccactccctggtggaggactacgcc
aaaagccctgctgtgcgcttgggccacatggcgtgcatggtggagaatgaatgcgaggat
ccaagtcaggagaccatcacattcctctacaagttcatctccggtgcttgccccaagagt
tacggcttcaacgccgctcgactcgccagcctgccagaggaggtcattcagtcgggacac
aggaaggccagagagtttgagaggagcaccatcagcctcagactcttcaagaagctgtgt
cagttcgctgaagactctaccctgggcaacacacactttgcttcacttgttcagatgctc
aacaccctgtag
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