Epinephelus lanceolatus (giant grouper): 117249001
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Entry
117249001 CDS
T07331
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ely04121
]
117249001 (pdzrn4)
Enzymes [BR:
ely01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117249001 (pdzrn4)
Ubiquitin system [BR:
ely04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
117249001 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
GRASP55_65
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
117249001
NCBI-ProteinID:
XP_033470185
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Position
23:19736703..19786726
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AA seq
819 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGRNFSKVDHEEAVVEAIRRDPIVVQVLRRTPTRAT
AAVAHNHSGTPQDVCVVDVCTQTDITFEHIMALAKLRPATPPVPDICPFLLSDSCHSIHT
MEHEFYECPEYLSNTPAEVERTEEYEYEEVELCRQNSQEKLGLTLCYRTDDEEDTGIYVS
QVEPNSIAARDGRIKEGDRILQINGCEVQDREKAVALLSSEEARSIVLLVTRPEIQLEEE
VWLDDEQQELVEELKMEILEERRRQKEHNFDRGDEYLAEEEMTTDTATCSSNNQDKDSGF
GRSTDSPEHQPLLARLHRRTPAHCLRERWRAEHPHTRRGTVVPQDTQSLRTLSKGQGHEG
VSIRNGGGGILGLENRFQQLLELKCQIRNGGECGVYSIRHSIECSVTEQGVDGDSVDSVG
GGNGVEQELRMLNEELRSIELECQSIMQAHQLRQSHQMEPSEPASSSPGRSPKDGHKRHG
RLADIHEYPERSDSDRIREKDSSSAYNTAESARSTPLGMERSPDHSLQRQISITNQKNLR
LASSTPSSPIPIPKPQGTPSRSRPADPGPVISSSPDQSNPSRSESDPALPADDERCEKKG
RARDSRRGLSYGSYQTTPYQGQGASRQLQSYMQLLQQHSSLEYSQSQLSLLSVCRDPVHR
SGRPGEPRLEWKVKVRADGTRYVARRPARDRILRERALRIREERSGGMTTDDDAMSEMKM
GRYWSKEERKQHLARAREQRKRREFMQKSRLECLKEGPASGAEGRKEVNILELSHKKMMK
KRNKKILDNWMTIQELMSHGARVPEGSKVHNAFLSVTTV
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatttgtgcaccttgcagaaacgggaggaacactacaaactgctgtatgag
attgcacaggtgaatgggcgcaacttctccaaggtcgaccatgaggaggcagtggtggag
gccatcaggcgagacccaatcgttgtccaggttctgcggcgaacccccaccagagccacg
gctgctgttgcacacaaccacagtggcacaccacaggacgtgtgtgtggtggatgtttgc
acgcaaacggacatcaccttcgagcacatcatggcactggcgaagcttcggcctgctact
ccgcctgtccctgacatctgtcccttccttttgtctgacagttgtcattccatccacacc
atggagcatgagttttatgaatgtccagagtacctgtccaatactccagcagaggtggag
agaactgaagagtatgagtatgaggaggtggagctgtgcaggcagaacagccaggagaag
cttggcttgacgctgtgctacaggactgacgatgaggaggacaccggcatttatgtcagc
caggtggagccaaacagcatagcagcgagagacggacgcatcaaggaaggagatcgtatt
ctacagataaatggctgtgaagtgcaagacagagagaaagctgttgccttgttgtcaagt
gaagaagcgaggagcatcgtgctactggtgacaagaccagaaatccagctggaggaggag
gtatggctggatgatgagcaacaggagctggtggaggagctgaagatggagattctggag
gagaggaggaggcagaaggaacataactttgacaggggggatgagtatctagctgaagaa
gagatgacgacagacaccgctacctgttcctcaaacaatcaagacaaagacagtgggttt
ggacgcagtacagacagtccagagcaccaacccctgctggctagactgcacaggaggacc
ccagcccattgcctgagggagcgatggagggcagagcatccacacacaagacgagggact
gtagtgccacaggacacccagagtctgaggacattgtcaaaaggccaaggccatgaaggg
gtcagtattcgcaatggcggaggtgggatcctaggtttagaaaatcgcttccagcaactc
ctggagctcaagtgccaaatccggaatggaggcgagtgtggggtgtactccatccgacac
agtatagagtgtagtgtcactgagcaaggagtggatggagatagcgtagatagtgttgga
ggagggaatggagtggagcaggagttgaggatgctaaatgaggaactgcgcagcattgag
ctcgagtgccagagcatcatgcaggcgcatcagctccgccagagccaccagatggaacct
tcagaacctgcatccagctcaccaggacggagccccaaagatggacacaagcggcacggc
aggttggctgacatccacgaataccctgagcggtcggacagcgataggatccgggagaag
gacagctccagtgcctacaacacggcagagagtgcacggtcgacaccgctaggtatggag
agatctcctgatcattctctgcagagacaaatcagcatcaccaaccagaaaaacctcaga
ctggcttcctcgacaccctccagccccatcccaatccccaagccccagggtacacccagt
cgtagcagaccagcagacccaggccctgttatctccagcagcccagatcagagcaaccct
tcccggtccgagtcagaccctgccctgcctgcagacgatgaaaggtgtgagaagaaaggg
agggccagagactccaggagggggttgtcctatggttcgtatcagacaactccctatcaa
ggccagggagcatccaggcaactgcagagttacatgcagctgctacaacagcactcatcc
ctggagtattcccagagccagctgagtctgctcagtgtctgtcgagatcccgtgcaccgg
agcggacgccctggggaaccccgtctggagtggaaggtcaaagttcgggctgacggcaca
cgctacgtggcccggaggcctgctcgtgaccgaatcctgagggagcgggcgctaaggatc
agagaggagaggagcggaggcatgactacagatgacgatgctatgagtgagatgaaaatg
ggccgctactggagcaaagaggagcggaagcagcatttggcgcgggctagggagcaaagg
aagaggagggagttcatgcaaaagagccgccttgaatgtttaaaggaggggccagctagc
ggagcggagggcaggaaggaggtcaatatcttggagctcagtcacaaaaagatgatgaag
aaacgaaacaaaaagatcctggataactggatgaccatccaggagctgatgagccatggg
gcaagagtcccagagggttccaaagtacataacgccttcctgtctgtcacaactgtctag
DBGET
integrated database retrieval system
