Epinephelus lanceolatus (giant grouper): 117249062
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Entry
117249062 CDS
T07331
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ely03016
]
117249062 (rtcb)
Enzymes [BR:
ely01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
117249062 (rtcb)
Transfer RNA biogenesis [BR:
ely03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117249062 (rtcb)
Prokaryotic type
tRNA splicing ligases
117249062 (rtcb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
117249062
NCBI-ProteinID:
XP_033470321
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All DBs
Position
23:complement(3379959..3386251)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKISSNCWRIKKGFVPNMQVEGNFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHKSIGLPDVHSGYGFAIGNMAAFDMGDPNAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE
HIVDGKQKTLLIHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADQGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagttataatgatgagctgcagtatctggataaaatcagcagcaactgttgg
aggattaaaaaaggtttcgtccccaacatgcaggttgagggaaacttctacgtgaacgac
gctctggagaaactgatgtttgaggagcttcgtaacgcctgtcgagggggaggtgtggga
ggattccttccagccatgaaacaaatcgggaacgtggcagcgctgccggggatcgtacac
aaatccatcggtctccctgacgttcactctggatatggatttgcaatcggaaacatggcg
gccttcgacatgggcgaccccaatgctgtggtgtctccaggcggtgtcggttttgacata
aactgcggtgtccgtcttctgaggacgaacctggacgagggagacgttcagccggtgaag
gagcagctcgcccagtcgctgttcgaccacatcccagtgggcgtcggatccaagggagtc
atccccatgggggccaaggacctggaggaggctctggagatgggcgtggactggtctctg
agggagggctacgcctgggccgaggacaaggagcactgcgaggagtacggcaggatgctg
caggctgaccccaataaagtgtcctccaaggccaagaagagaggcctgccgcagctgggg
acgctgggagcaggaaaccactacgctgagatccaggtggtggacgagatctacaacgac
tacgccgccaagaagatgggcatcgaccacaagggccaggtgtgtgtgatgatccacagc
ggcagcagagggcttggacaccaggtcgccacagacgctctggttgccatggagaaggcg
atgaagagagataagatcactgtgaacgaccgtcagctggcctgcgctcgcatcacgtca
caggaaggacaggactacctgaagggcatggccgctgcaggaaactacgcctgggtcaac
cgctcgtccatgaccttcctcaccagacaggccttttccaaagtgtttggcacaacgccg
gacgaccttgacatgcacgtgatctacgacgtctctcacaacatcgccaaagtggaggag
cacatcgtggatgggaagcagaagactctgctgatccaccgcaaaggatccacccgagcg
ttccccccacaccacccactcatccccgtagactaccagctcacaggtcagccggtgttg
atcggagggacgatggggacctgcagctacgtcctcaccgggacagaacaaggcatgacg
gagacattcggcaccacctgtcacggagcgggtcgcgctctgtcccgagcaaagtcccgc
aggaacctggacttccaggacgtcctggacaaactggctgatcagggcatcgccatccgg
gtggcttcacccaaactggtcatggaggaggcgcccgaatcgtacaaaaatgtgacggat
gttgtcaacacgtgtcacgacgctggcatcagtaagaaggcgatcaaactgcgaccaatc
gccgtgattaaaggttga
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