Epinephelus lanceolatus (giant grouper): 117249724
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Entry
117249724 CDS
T07331
Symbol
itgb5
Name
(RefSeq) integrin beta-5
KO
K06588
integrin beta 5
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely04145
Phagosome
ely04148
Efferocytosis
ely04510
Focal adhesion
ely04512
ECM-receptor interaction
ely04810
Regulation of actin cytoskeleton
ely04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117249724 (itgb5)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
117249724 (itgb5)
04148 Efferocytosis
117249724 (itgb5)
09144 Cellular community - eukaryotes
04510 Focal adhesion
117249724 (itgb5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117249724 (itgb5)
04810 Regulation of actin cytoskeleton
117249724 (itgb5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ely04131
]
117249724 (itgb5)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ely04515
]
117249724 (itgb5)
Membrane trafficking [BR:
ely04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
117249724 (itgb5)
Cell adhesion molecules [BR:
ely04515
]
Integrins
Integrin beta subunits
117249724 (itgb5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
EGF_integrin
Integrin_b_cyt
PSI_integrin
EGF_2
I-EGF_1
EGF_Teneurin
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
117249724
NCBI-ProteinID:
XP_033471309
LinkDB
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Position
3:complement(2577376..2652487)
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AA seq
780 aa
AA seq
DB search
MWSPGTWMWRAALCCMLLETCLQPARGLNMCMSGSATSCEECLLIHPSCAWCAQEEFGRG
RTLTSRCDFIQNLHKRGCEARFVEYPTSSLSILKSRPLSSKGSGSSQYDVVQIMPQKISL
SLRPGAQTWFGLQVRQVEDYPVDLYYLMDLSLSMKDDLETIRNLGTKLALEMGKLTSNFR
LGFGSFVDKNMSPFSYTAPKYQENPCNGYKLFPNCVPTFGFRHILSLTDKVDRFNEEVQK
QMVSRNRDAPEGGFDAILQAAVCKEEIGWRKEAYHLLVFATDDVPHLALDGRLGGLVQPH
DGRCHLNEKNEYSASTQMDYPSLALLGEKLAENNIFLIFAVTKRLYVIYKNFTALIPGTT
VEILDQDSKNVIQLIVAAYNNIRSKVELSVWDHPEDISLSFTATCQDGQPLPGLRKCADL
KIGDTVSFNVSVEARSCPPRGTDQSFTIKPVGFKERLEVAVDYQCDCGCSRRAQTNSSIC
SSIGTYNCGTCHCEPGYLGARCECQEGEASSMYLSACREAEGKQICSGRGECSCNQCLCY
ESEFGKIYGSYCECDDFSCARHKGILCSGHGECHCGECKCHAGYIGDNCNCSTETSSCIS
DDGQMCSGRGNCMCGRCQCTEPGAFGDTCEKCPTCPDACGTKSDETQSAEQGKGTDEPGA
VLCLYKTDNDCVMKFTYSEHASGQSILTALKEPECAAGPDALTVLLAVVGSILLVGVVLL
AAWKLVITIHDRREFARFQSARSRARYEMASNPLYKQPVTTHFVETDFNMYGKSYNGGVH
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcccggggacgtggatgtggagagcggctctgtgctgcatgctcctggaaaca
tgtctgcagcctgccagaggtctaaacatgtgtatgagcggcagcgctacgtcatgtgaa
gaatgcctcctgattcaccccagctgcgcctggtgcgcacaagaggagttcgggaggggg
cggactctgacgtcacgctgcgattttattcaaaacctgcataagaggggctgcgaggcg
cggtttgttgagtaccctaccagcagtctctccatcctgaagagcaggcctctgagctct
aaaggatctgggtcgtcccagtatgacgtggtccagatcatgcctcagaagatctccctc
agcctgcggccaggagcccagacgtggtttgggctgcaggtgcggcaggtggaggactac
ccagtggatctctactacctgatggacctctctctttccatgaaagatgatctggaaacc
atccgtaacctgggcaccaaactggccctggagatgggcaagctcaccagcaacttcagg
ctgggcttcggttccttcgtggacaaaaacatgtcgcccttctcctacacagcacccaag
tatcaggagaatccatgcaatggatacaaactgttccccaactgcgtccctaccttcggt
ttccgccacatcctctcactgacggacaaagtggaccgctttaacgaggaggtgcagaag
cagatggtgtctcgcaaccgggatgcaccagagggcggatttgatgccatcctgcaggct
gctgtttgtaaggaggagatcggttggagaaaggaggcctaccacctgctggtgttcgcc
acagacgacgtgcctcacctcgccctggatggccggctgggaggcctcgtccagccccac
gatggacgctgtcacctcaatgaaaagaacgagtacagcgcctccacacagatggattat
ccctctctggctcttctgggggagaaactggcagaaaataacatcttcctcatcttcgct
gtgacaaaacggctctacgttatttataagaactttactgcactcatacctggaaccacc
gtggaaatcctggaccaggactctaagaatgtaattcagctcatcgtggcagcttataat
aacatccgctctaaagtggagctgtcagtgtgggatcacccagaggacatcagcctttcc
ttcaccgccacctgccaggatggacagccgctgccaggcctcaggaagtgtgccgacttg
aagataggagacactgtatcgttcaatgtgagtgtggaggcgaggagctgccctccccgc
ggcaccgaccagagcttcactatcaagccggtggggttcaaagaacgtctggaggtggct
gtggattatcagtgtgactgtggctgcagccggagggcacaaaccaacagcagcatctgc
agctccatcggtacttataactgtgggacgtgtcactgtgagccgggctacctgggcgcc
cgctgtgagtgccaggagggcgaggccagcagcatgtacctcagcgcctgccgggaagcc
gagggcaagcagatctgcagcgggcgaggagagtgcagctgcaaccagtgtctctgctac
gagtcggagttcggcaagatttacggcagctactgcgagtgtgacgacttctcctgcgcc
cgacacaaaggcatcctctgctcaggtcacggagaatgtcactgtggggagtgtaaatgc
catgctggttacatcggagacaactgtaactgctctacagagacgtcgtcctgcatctca
gacgacgggcagatgtgcagcgggcgaggaaactgcatgtgcggccgctgtcagtgcacc
gagccaggagcctttggagacacctgtgagaagtgccccacctgccctgacgcctgcggc
accaaaagtgatgagacgcagtcagccgagcagggaaaaggaacggatgagcccggcgct
gtgctttgtctctataagacagacaacgactgtgtcatgaagttcacgtattctgagcac
gccagtggacaatccatcctcacagctctcaaagagccagagtgtgccgccgggcccgat
gctctgacggtgctgctcgcagtggtcggcagcatcctgctggtgggggtggtgctgctc
gctgcctggaagttggtcatcaccattcatgaccggagagagtttgcacgcttccagagt
gcacgctcacgagcccgatatgagatggcctccaaccctctgtacaagcagcctgtcacc
acacactttgtcgaaacggatttcaacatgtacgggaagtcctacaacggaggggtccac
tga
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