Epinephelus lanceolatus (giant grouper): 117251197
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Entry
117251197 CDS
T07331
Symbol
col4a2
Name
(RefSeq) uncharacterized protein col4a2 isoform X1
KO
K06237
collagen type IV alpha
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely04382
Cornified envelope formation
ely04510
Focal adhesion
ely04512
ECM-receptor interaction
ely04518
Integrin signaling
ely04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117251197 (col4a2)
04518 Integrin signaling
117251197 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117251197 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117251197 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117251197 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ely04147
]
117251197 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
ely00536
]
117251197 (col4a2)
Exosome [BR:
ely04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117251197 (col4a2)
Glycosaminoglycan binding proteins [BR:
ely00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117251197 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117251197
NCBI-ProteinID:
XP_033473141
LinkDB
All DBs
Position
14:27602857..27696565
Genome browser
AA seq
1678 aa
AA seq
DB search
MSRTMQGQHNRGLKDLRLLLLCLSIAILASAVHAGGKKHTGPCAGRDCSGGCKCFPEKGA
RGHPGPLGPQGPQGPPGKPGDMGIEGPKGQKGDRGRSGFIGPKGNVGMTGVPGFSGNDGI
PGHPGQAGPRGKPGADGCNGTQGESGLPGQAGANGAPGFPGQAGWKGQKGDPLDVIVYMQ
RFRGDPGTPGVNGIIGPLGTPGWQGNRGIPGPKGPPGPPGPRGPKGTMTKVLKGHKGDQG
DIGPQGPPGNSTHQQILPPYGPTGPRGEKGLKGEMGDPGFFEGSKGETGVIGFPGNRGEP
GADGRPGPRGDFGNPGPKGRDGPKGVRGEAGELISSGPSLPWSGGPPGPPGEQGPQGERG
PVGDQGFQGPPGQPAYDTQQQVWDFFGPFGFKGEPGEKGQPGEPGRPADIAGPPGTNGRP
GSMGPPGPKGTWAEFFKGAPGGRGRPGNAGYKGIKGDHGLCECTIVHSLPGLPGPAGEQG
DAGMTGEFGQEGDEGDTGPRGVDGFPGPPGISGAPGPKGRKGAARAASQKGYPGDQGDHG
RDGGSGAPGAPGLNGLPGLPGSRGLPGEGPRGEPGDKGYPGQRGRPGEPGLRGIDGEVLG
GVKGQRGLPGDDGHAGYDGVPGTPGSPGGCSPTGGGGQVDVTGPCDAVPGPPGLPGSPGP
PGLPGVPGPVGLKGPQGPYGAVGEKGETGDQGIGGRPGPPGFAGPRGDLGFPGAKGSVGG
PGVPGVPGRHGPQGQKGFHGEILGASPGPPGDIGLPGLQGNKGQTGDPGDQGYPGMPGMP
GMIGFKGESGPLGLRGEEGRPGPAGKYGFPGDPGQAGPPGPRGGIGQPGLTGERGVEGDP
GPPGPIGLKGVPGLYGSDGPTGDYGPSGEPGQPGVDGRPGLGGMKGYKGSPGMSGFEGNR
GNQGAKGFSGFGGEPGLPGQAGPKGVTGRNGEKGDRGLRGPPGEKPYIPRHMIIDMKGAK
GDYGNYGNQGFTGPRGNKGMPGVPGLEGRHGLPGDPSPVKGVHGDPGAEGLQGIKGMPGL
TGNRGIAGFEGMSGNRGIKGSPGAYGASGDKGRKGAKGEGGQRIDLPGATGLRGEEGLPG
EPGLKGFVGPTGERGTPGFDGIEGRKGESGDPGISGFTGPDGQKGTPGTQGQKGFPGFPG
KDGHPGIPGFPGNKGFPGLKGLYGLHGLKGQKGNTGTPGLDVTGPAGEPGPKGQRGEDGD
PNNQPGFPGTVGLKGFQGPKGDHGRPGPPGFRGPVGPSGTPDKPGLSGDPGFTGPKGNQG
FPGPRGFPGVDAPPGEKGVPGFNGYPGVAGRKGFKGDQGPFGYRGPNGVSGKKGVKGEQG
VMGVPGVIGLKGERGSPGPKGNTGPPGFRGFPGSQGPLPIPINIPGERGPAGPRGIQGPK
GVIGEPGPQGPPGAPGFMGPIGHKGMPGISGRPGTPGFPGDPGQVGHPGLQGMEGRRGHT
GIPGLPGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGL
AGSCLPRFSTMPFLYCNPGDLCYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVC
EAPSVAIAIHSQDITIPQCPVGWRSLWIGYSFIMHTAAGNEGGGQSLSSPGSCLEDFRTT
PFIECNGAKGTCHYFANKHSFWLTSIDQSFHTEPAAETLKAGQLLSRISRCQVCMKNL
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggaccatgcaaggacaacacaacagaggactgaaggatctgaggctgctgctt
ctgtgcctctccattgccatcctcgcctcagcagtgcacgcgggtgggaagaagcacacc
ggcccctgtgcaggaagagactgcagcggaggctgtaaatgtttcccagagaagggtgcc
aggggtcatcctgggcctctcgggcctcagggcccccaggggcctccagggaagccaggt
gatatgggcatcgagggaccaaaggggcagaaaggtgaccgtggccgcagtggtttcata
ggtcccaaaggaaatgtgggaatgactggcgttcctgggttttctggaaacgatggcatt
cctggccacccaggacaggctgggcccagggggaagccaggtgctgacggctgcaacggg
acacagggagaatcagggttaccagggcaagccggtgcaaacggtgcgccaggttttcct
ggacaagcaggctggaagggacagaagggagaccctctggacgtcatcgtgtacatgcag
cgcttcaggggagatccaggcacgccaggggtcaacggaataattgggcctctaggaact
ccaggatggcagggtaacagaggcatcccaggaccgaagggtcccccagggcctccaggt
ccccgtggaccaaagggcacaatgaccaaggtgcttaagggacacaaaggagaccaaggg
gacatcggaccgcaagggccaccaggaaactctactcatcagcagattctgcccccctac
ggacccacaggacctcgtggagagaaaggtctgaaaggagaaatgggagatccgggtttt
tttgagggtagcaaaggagaaacaggtgtgattggattccctggaaaccggggtgaacct
ggtgcagatggacgtcctggaccgaggggtgatttcggcaacccaggaccaaaaggcaga
gatggtcctaagggggtcagaggtgaagcgggagaactgatttcatcaggaccctcattg
ccttggtcaggtggtcctcccggtcctcctggtgagcagggtccacagggagagaggggc
ccggttggagaccaaggcttccaaggacccccaggacaacccgcctatgacacacagcaa
caagtgtgggatttcttcgggccatttggtttcaagggggagccgggagagaagggccag
cctggcgaaccaggacgccctgctgacatcgcaggacccccaggcaccaacgggcgccca
gggtctatggggcctccaggacccaaaggaacatgggctgagttcttcaaaggggcacct
ggtgggagaggaaggcctggcaatgcaggctataaaggaataaaaggtgaccatggactg
tgtgaatgcaccatcgtgcactctttaccggggctacctggccctgccggtgagcaaggt
gatgctgggatgaccggtgagtttggtcaggagggtgatgaaggagacacaggtccccgt
ggagtcgacggattccctggacctcctggcatcagcggtgcgccgggcccaaaaggtcgt
aaaggggcagcgagagcggcctcacagaaaggatatcctggagaccaaggtgatcacgga
cgagatggtgggtcaggtgcgccaggtgctcctggactaaatggtttgcccggtctccct
gggagccgaggtcttccaggagaaggtcccagaggagaacccggagacaaaggttaccca
ggtcagcgtggtcgtcccggtgaacccgggctacgtggaattgatggtgaagtccttggg
ggcgtcaagggccagcgtggtttacctggtgacgacggccacgcgggctatgatggagtt
ccaggaacacctggcagcccaggcggctgtagtccgacaggaggtggaggacaggtggat
gtaacaggtccttgtgatgctgtaccaggacctcctgggctgcctggatctccaggaccc
cctggattgccaggtgtcccaggtcctgtgggcttaaagggaccacagggtccatatgga
gcagtcggagagaaaggagaaacaggagatcaggggataggcggtcgtcctggaccacca
ggttttgccggcccccgtggagacttgggatttcctggcgctaaaggttcagtaggaggc
cctggtgtgcctggtgtgcctggccggcatgggccgcaaggtcagaaaggttttcatgga
gagatcttgggagcatcgcctggaccccctggtgacatagggctgcctgggcttcaaggg
aataaaggccagactggagatccaggcgatcaaggctatccagggatgccgggcatgcct
ggtatgatcggcttcaagggtgagagtggccctcttggcctgcgaggagaggaaggacgg
cctgggccagcgggcaagtacggcttccctggtgatcctgggcaagcaggaccacctggg
cctcgtggtggtattggacagccaggtttaactggggagaggggagttgaaggagaccca
ggtcctccaggtccaataggattaaaaggtgtcccaggactgtacggtagtgatggtccc
actggagattacggcccatcaggtgaaccaggacagccaggtgtagatggacgtccagga
cttggaggaatgaagggatacaaagggtctccaggcatgtcaggttttgaggggaacagg
ggtaatcaaggtgcaaagggcttcagcgggtttggtggagaacctggactgccaggccaa
gctggcccaaaaggagtgactggtcgaaacggagagaaaggtgatcgtggtttgagagga
ccacctggggagaagccttacataccccgccacatgattattgacatgaagggagccaag
ggagactatgggaattatggaaatcaaggtttcaccggaccaagaggtaataagggtatg
cctggtgtgccgggcttggagggaagacatggtcttcctggagaccccagccctgtgaaa
ggtgtccatggagatcctggtgcagaggggcttcagggaataaaaggaatgccaggcctc
acaggaaatcgaggaattgctggttttgagggaatgtcaggcaacaggggaattaaaggc
agtcctggtgcctatggtgcatcaggagacaaaggaaggaagggcgccaaaggtgaggga
ggccaacgcatagaccttccaggagccaccggattgagaggagaggaaggtttaccagga
gaaccaggcctgaaaggattcgttggcccaacaggagaaaggggtacacctggttttgat
gggatcgaagggagaaagggagagtcaggtgatccaggaatatcaggattcacaggccct
gatgggcagaaggggactcccggtacccaaggtcaaaaaggctttcctggatttcctgga
aaagacggacatccaggtattcctggcttccctggaaacaaaggtttccccggcttgaaa
ggtctttatggattacatggactgaaaggacaaaagggcaacacgggaacaccaggtctg
gatgtcactggaccagctggagagccgggacctaaaggacagaggggagaggacggtgac
cccaacaaccagccaggttttcctggcacagtcggtttgaaaggtttccagggacccaaa
ggtgaccatggtcgacctggaccgcctggattccgtggccctgtaggaccaagtgggacc
cctgacaaaccaggattaagtggggatcctggcttcacagggcccaaagggaaccaaggt
ttccctggacccagaggattccctggtgtggatgccccccctggagaaaagggtgtacca
ggatttaacgggtatcctggagtcgctggtaggaaaggattcaaaggggatcaaggtcca
ttcggatacagggggccaaacggtgtttctgggaagaaaggagtgaaaggagagcaagga
gtgatgggagttcctggtgttatcggtctgaagggagaaagagggtcacctggtccaaaa
ggaaacactggacctccaggtttccgaggattcccaggaagccagggtcctcttccaatt
cccatcaacattccgggagagagaggccctgcaggaccgcggggtatccaaggaccaaag
ggggtcataggggaaccagggccacagggcccccctggtgctccaggtttcatgggaccc
attgggcacaagggcatgcctgggattagtggtagaccaggaacgcctggatttcctgga
gaccctggacaagtgggccaccccggtctgcaaggcatggaaggtcgccgtggccacact
ggtatccctgggttacctggtatgccgggccgcagtgtcagtgtgggttacctgctggtg
aaacacagtcagtcagagcagacgcccatgtgtcctgtgggcatgtccaaactgtgggac
ggctacagtctgctgtactttgagggccaggaaaaggcccacaaccaggatcttggtttg
gcgggctcctgcctcccacggttcagcaccatgcccttcctgtactgcaaccccggagac
ctttgttactacgccagcagaaatgacaaatcctactggctgtcgacgactgctcctctt
cccatgatgcctgtagaagaaggagagatcaaaccatacatcagccgctgctctgtatgc
gaagctccatcagtcgccatcgcaatccacagccaggacattaccatcccacagtgtcct
gtgggctggcgcagcctgtggatcggctactccttcatcatgcacacagcggcaggaaat
gaaggtggaggtcagtccttgtcgtcgcccggctcctgcctggaggacttccgcacaaca
ccattcatcgagtgcaacggggccaaaggcacatgccactactttgctaacaagcacagc
ttctggctcacctccatagatcagtcgttccacactgagccggcagcagagacgctcaaa
gcaggccagctcctgtcacgcatcagccgctgccaggtctgcatgaagaacttgtga
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