Epinephelus lanceolatus (giant grouper): 117251418
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Entry
117251418 CDS
T07331
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117251418 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ely03041
]
117251418 (prpf40a)
Spliceosome [BR:
ely03041
]
Complex A
U1 snRNP components
U1 related factors
117251418 (prpf40a)
Complex B
117251418 (prpf40a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Lipocalin_5
Motif
Other DBs
NCBI-GeneID:
117251418
NCBI-ProteinID:
XP_033473579
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Position
3:23945197..23966346
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AA seq
879 aa
AA seq
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MSSSDANNGPSQAPPYPGVPPSGIPPPFMGPPGIPPHFPPIGMPPMGQRPPSMTPMPPGI
IPPGIMPPMGAPPMGQMPGMMPPMMPGMMMPPRIPAAAVQPTGPPGVDPTAAAPGTASTT
NGSPQEEQPKKKSVWTEHKSLDGKTYFYNTETKQSTWEKPDDLKSPAEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTAEAMAPGTTAAPAVQADNTATM
ATVMEAETATAVSEEHLSQAAVHHTAEVKAVEAPVASLESAVATEATASVEVTKEERPEL
QKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHDKMTSTTRYKKAEQMFNELEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHD
HGQLHSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDIL
KDKGFLVEVNTSFEDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKEAAFKNMLKQATPPLEPETTWEGVRERFLKESAFEDVTLESERKRIFKDFMHVLEHE
CQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDEDYHKKKKRSQSKSPSERSSSGESERS
YKKSKKHKKKAKKRRHKSASPDSDADKKGRERDGKREKDLERDKENDKSRGKSRSDSKQK
SPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgtcggacgctaataatggcccgagccaagcaccaccttatccaggcgtaccg
ccctcagggatacctcccccatttatgggaccaccaggaataccgcctcatttccctccc
atcggaatgccccccatgggacagagaccgcccagcatgacacctatgcctcctggtata
attccccctggtataatgccgccaatgggggcaccgccaatgggacagatgccaggcatg
atgccacctatgatgccagggatgatgatgccccctcgcataccagctgcggctgtacaa
ccaacgggaccgcccggtgtcgaccccacagctgctgcacctggaacagctagcaccaca
aatggatctccacaggaggagcagccaaaaaagaaatctgtgtggacagaacacaaatca
ctggatgggaagacctacttttataatacagagactaagcagtccacatgggaaaaacca
gatgatctcaagtctcctgcagagcaaatgctgtctaaatgcccttggaaggagtacaag
tcagacacagggaagccttattattacaactctcagactaaggagtccagatggaccaaa
cccaaagagctggaggatctggaagctatgatcaaagcagaggagaatggaacggcagag
gcgatggctcctggcaccacagcagctcctgcagtgcaagcagataatacagccactatg
gcaaccgtaatggaggcggaaactgcaacagcagtctcagaggaacacctgtctcaggcg
gccgtgcatcacacagctgaggtcaaggctgtagaagcacctgtggcttccttagagagt
gcagtcgccacagaggccacagccagtgttgaagtcacaaaagaggaacggccagaactt
cagaagaaaacttacaagtggaacacgaaagaggaggccaagcaggcattcaaagagctg
ctgaaggagaagggtgtgtcctcaaactcctcttgggagcaggctatgaaaatgattatc
aatgatcctcgctacagtgcacttcccaaattgagtgagaagaaacaggcgttcaatgcc
tacaaagtccaaacagagaaggaggaaaaagaggaggccagaattaaatacaaagagtcc
aaagagacctttcaaaggttcttggagaaccacgataagatgacgtctaccaccagatac
aagaaagcagagcagatgtttaatgagctggaggtgtggagctgtgtaccagagagagac
aggctggagatatatgaagatgtattgttctacctggctaagaaagagaaggagcaagcc
aagcagctaagaaagaggaactgggaagctcttaagaacattttggacaacatggccaac
gtcacataccgcaccacctggtctgaggcccagcagtatctgctagacaaccccaccttt
gcagaggacgaggagctgcagaatatggacaaagaagatgccctcatttgttttgaggag
cacatccgggcgctggagaaggaggaggaggaggagaaacagaagactcttctcagggag
aggagacgacagcgcaagaacagagaggccttccagaaattcctggatgagctccacgat
cacggtcagcttcactccatgtctgcctggatggagatgtacccgaccctgagctcagac
atccgcttcgccaacatgctgggccagccaggttccactccactagatctgttcaaattc
tatgtggaggacttgaaagcccgctaccatgatgaaaagaggatcatcaaagatattctt
aaggacaaaggcttcctggtggaagtcaacaccagctttgaagactttggatcagtcatc
agctcagacaagagagccaccacactggatgcaggaaacatcaagctggcattcaacagt
ttactggagaaagcagaagccagagagagagaacgagagaaggaggaggccaggaagatg
aaaaggaaggaagcagcctttaaaaacatgctgaagcaggccacaccaccgctggagcca
gaaaccacatgggagggggtcagagagagattcttaaaggagtctgcctttgaagacgtg
actctggagtcagagaggaaaaggatattcaaagatttcatgcatgtcttagagcatgaa
tgccaacatcaccactcgaagacaaagaagcactcaaagaagtccaagaagcaccacagg
aaacgatcccgctctcgatcgggctcagagtctgaggatgaagattaccacaagaagaaa
aagcggtcacagtccaaatctccttctgaacgctcgtctagtggagagtcagagagaagc
tataaaaaatccaagaagcacaagaagaaggcaaagaagagacgtcataagtctgcatcg
ccagactctgacgctgacaagaaaggaagagagcgcgatggaaagcgtgaaaaggattta
gagagagataaagagaacgacaagtctcgggggaaatctcgctctgactctaaacagaag
tctccgaaaagaaaagctgcaaaagaggagggcggctgggacacgtcaggcagtgagctg
agtgaaggagagctggagaaaaggagaagaactttactggaacagctggatgcaccttga
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