Epinephelus lanceolatus (giant grouper): 117251541
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Entry
117251541 CDS
T07331
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
117251541 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ely03019
]
117251541 (ddx3xa)
03041 Spliceosome [BR:
ely03041
]
117251541 (ddx3xa)
03036 Chromosome and associated proteins [BR:
ely03036
]
117251541 (ddx3xa)
Enzymes [BR:
ely01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117251541 (ddx3xa)
Messenger RNA biogenesis [BR:
ely03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117251541 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
117251541 (ddx3xa)
Spliceosome [BR:
ely03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117251541 (ddx3xa)
Chromosome and associated proteins [BR:
ely03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
117251541 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
117251541
NCBI-ProteinID:
XP_033473842
LinkDB
All DBs
Position
3:complement(5198654..5216969)
Genome browser
AA seq
817 aa
AA seq
DB search
MSHVVVDNPHGLDQQLAALDLNSADGQGGGTGRRYIPPHLRNKDAAKNAGNAYSAGRQCG
YSVAPVNLFSSKQYPQPWQAECQQRHRNDYATGWDDCKIGYPRLASQELAFYHAYSGGWR
NRCASSSACTDNSVASDGNDDTASVQSWADRCDSPGWDGGRSNGFVNGYHDNRTNGGFGG
RGPPRNDRGGRGAYRGNRGGGSFNQPLQNAGFGGEGNWGAPRDNTYNSFGGRNDRSKSNF
FNDRGAGSRGRYERGGFAGGGNSRWVDDSREEDWSKPTAPNERLEHELFSASNTGINFEK
YDDIPVEATGSNCPPHIESFHDVDMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMA
CAQTGSGKTAAFLLPVLSQIYSDGPGDALQAAKNSGQENGRYGRRKQYPISLVLAPTREL
ALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRELERGCHLLVATPGRLVDMMERGKIGL
DYCNFLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLE
DYIFLAVGRVGSTSENITQKVVWVEETDKRSFLLDLLNATVIPSEVQENVTEAPEKPGKD
SLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVA
ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNSNITKDLLDILV
EAKQEVPSWLESLAYEHQHKSSSRGRSKRFSGGFGARDYRQTSGGPGNFSSNRGGRNTGG
HGGNRGFGGGGFGGNFYSNDGYGGNYSHSGSVDWWGN
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgttgataatccacacggtctagatcagcagcttgctgccctagac
ttgaactctgctgacggacaaggcggaggaactggcaggcgttacattccacctcacttg
agaaacaaagatgcagccaaaaacgcaggaaatgcttattccgctggtagacagtgcggt
tattcagtggcaccagtaaatctcttttcttctaagcagtacccacaaccatggcaggca
gagtgtcagcaaagacacagaaatgactatgcaacaggatgggatgactgtaagattggt
tacccaagactggcctctcaagagcttgccttttaccatgcctacagtgggggttggcga
aacagatgtgcctcatcctcagcctgcactgataacagtgtggcctccgatgggaacgat
gacacagccagtgtccaaagctgggcagatcgttgtgattcacccggatgggacggtgga
cgcagcaatggatttgtgaatggttaccatgacaaccgcacaaatgggggctttggaggg
cgaggaccccctcgcaatgatagaggtgggcgtggcgcctaccgtggtaacaggggtgga
ggctcgtttaatcaaccattacagaatgcagggtttggaggtgaaggcaactggggagct
cctcgggacaatacctacaacagctttggaggacgcaacgacaggtcaaagtctaacttc
ttcaatgaccgtggagcaggctcaaggggaagatatgagcgtgggggctttgctggtgga
ggaaacagccgctgggtggacgactccagagaggaggattggtccaagcccaccgctccc
aatgagcgcctggaacatgagcttttctctgcaagcaacactgggataaactttgagaag
tatgatgacattccagtggaggccactggatccaactgcccgccacacatcgaaagtttc
catgatgtggacatgggggagattatcatggggaacatcaacctgagtcgctacactcgt
cccactccggttcagaagcacgctatccccatcatcaagtccaagagagacttgatggct
tgtgcccagactggctccggcaagactgctgctttcttgctgccagtgctgagtcagatc
tacagcgacgggcctggagacgctctgcaggctgccaagaacagtggccaggagaatgga
aggtatggccgccgcaagcagtacccgatctctctcgtcctggctcccaccagagagctg
gctctgcagatctacgatgaggcgagaaagttcgcctatcgctcacgtgtgcgtccctgc
gtggtgtacggaggcgctgatattggccagcagatcagggagttggagagaggctgtcat
ctgctggtggccacacctggacgtctggtcgacatgatggagaggggcaagatcggtctg
gactattgcaacttcttggtcctggacgaggctgaccgcatgttggacatgggtttcgag
ccacagatcagacgcattgtggagcaggatacaatgccacctaaaggcatccgccagacc
atgatgttcagtgccaccttccccaaggaaatccagatccttgctcgcgacttcctggag
gactacattttcctggcagtgggccgtgttggttccacttcagaaaacatcacccagaag
gtggtctgggtcgaggagaccgacaagaggtccttccttcttgacctgctcaatgccaca
gttattcccagtgaggttcaggaaaatgtgacagaggcaccagagaaaccgggcaaagac
tcgttgactctggtgtttgtggaaaccaagaaaggagcagacgctctggaagacttcctc
taccacgagggatacgcctgcaccagcatccatggagatcgatcccagagggacagagag
gaagctctgcatcagttccgctctggacgctgccccatcttggtggctacagctgtggct
gccagaggtctggacatcagcaatgtgaagcacgtcattaacttcgatttgcccagtgac
attgaggagtacgttcaccgtattggccgtacgggacgtgtgggcaatctgggtctggcc
acgtcgttctttaacgacaaaaacagcaacataaccaaagatttgctggacattttggtg
gaggccaagcaggaggttccctcctggcttgagagcctagcctacgagcaccagcacaag
agcagcagccgcggacgctctaagaggttctctggtggttttggagctagagactaccgt
cagacgtccggtggccctggaaacttcagtagcaaccgtggtgggcgtaacactggaggc
catggaggaaaccgtggctttggtggaggtggctttggaggcaacttctacagcaatgac
ggctacggaggaaattacagccactctggtagtgtggattggtggggcaactag
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