Epinephelus lanceolatus (giant grouper): 117251673
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Entry
117251673 CDS
T07331
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03013
Nucleocytoplasmic transport
ely03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117251673 (upf3a)
03015 mRNA surveillance pathway
117251673 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ely03019
]
117251673 (upf3a)
Messenger RNA biogenesis [BR:
ely03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117251673 (upf3a)
mRNA cycle factors
P-body specific factors
117251673 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
117251673
NCBI-ProteinID:
XP_033474060
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All DBs
Position
3:complement(12709007..12724302)
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AA seq
467 aa
AA seq
DB search
MRSEKDQMTVGKEKSVVEIQFRDLPREQENIPGNLKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSYDYFEFFPADQSLYPHLFCRAYINFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSDKDIKIKLLKKSDRDDDVDSDRMKDKSDIGETERGKWEKAGGQMKSK
DLKDKGQPESDKEQREQHGRRQRDKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGYC
QDRAKKEGHHHGYSYCSDSGDKLGKEDREDLGNRKERLRNKVSEKDRPAMQLYQPGARNR
KRMSSAGKGYDCIPVGHSPEPGTEHCYEAVTMATGVEKGFEKSKEEQ
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgaccgtgggcaaggagaaaagcgtcgtggagatacag
ttcagagacctcccgagggagcaggagaacattcccggtaacctgaagcagaaggaggag
aagaaggaggtgttcacgaaggtggtgattcggaggcttcctcctaacctgtcaaaggac
cagctagaggagcagctcagtccgcttccatcctacgactactttgagttctttccagct
gatcaaagtctttacccgcacttgttctgcagagcgtacatcaactttaaaaaccccgaa
gacatcctgctgttcagggaccgattcgatggctacgtcttcattgacaacaagggccaa
gagtatcctgctgtggtggagtttgcccccttccagaaaatctccaagaagaagctgaaa
aagaaagatgccaaagccgggagcattgaagaagacccagagtataagcggttcttggag
aattactcctgcgatgaggagaagtctatggccaaccctgagactctgctgggagagata
gaagccaagaccagagagctcatcgccaaacggacaacacctctgttggagtacatcaaa
aataagaaaattgagaaacagagaataagagaagagaaaagagaggagaggagacgaaga
gagctcgaaaagaaacggcagagggaagaggagaagagaaagcgacgagaggaagagaga
cgcaaacgaaaggaggcagagaagcagaagaaactgtctgataaagacatcaaaatcaag
ctcctgaagaagagtgacagggacgatgacgtggattcagaccggatgaaggacaaaagc
gacatcggggagacagagaggggcaaatgggagaaagctggaggacagatgaagtcaaag
gacctcaaagacaaaggtcagcctgagagtgataaggagcagagagagcagcacggtcgc
agacagagagataaggaccaccgtggtaaagacgaagagaggaaacgacagagacaccac
tatgagtttgacaaattcatgcgccgcaaagatgaaaccaaatgggggaagggctactgc
caggaccgagccaagaaagagggccaccatcacggttactcttactgttctgacagcgga
gacaagctgggaaaagaggacagggaggacctgggtaacaggaaggaacgcctccgaaac
aaggtgagcgagaaggaccgtccagccatgcagctctaccagccaggcgcacgcaacagg
aagcgcatgagctcagcgggcaaaggctacgactgcatccccgtgggccactcacctgaa
cctgggacagagcactgctacgaggctgtcactatggcaacgggggtggagaaagggttt
gagaaaagcaaagaggaacagtga
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