Epinephelus lanceolatus (giant grouper): 117251988
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Entry
117251988 CDS
T07331
Symbol
msh3
Name
(RefSeq) DNA mismatch repair protein Msh3
KO
K08736
DNA mismatch repair protein MSH3
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117251988 (msh3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ely03400
]
117251988 (msh3)
DNA repair and recombination proteins [BR:
ely03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117251988 (msh3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Mo-nitro_C
Motif
Other DBs
NCBI-GeneID:
117251988
NCBI-ProteinID:
XP_033474495
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Position
4:16065146..16137990
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AA seq
1122 aa
AA seq
DB search
MPKSVKKSCTTQTSISRYFGGLSSSSSSSSASNTQCGINQNPAVHQLSRGKKKLSPDDDF
GLSPKRARLPVQDQQVEDLDCELAPCQDTKETTQTSRRGAAALCASTLERLKGFTCSAEP
SIGHSDAQRGEKRTEGADSKISERGSSGVSPWDVKDQNSDNKGLQPTEEEREDEEEEAEE
KESSVLAATKQGFRFSQFAKPGGGRSAEQSPPSESSAPSRRSKSVYTPLELQVIQLKQQH
KDALLAVECGYKYRFFGEDAEIAAKELNIVCHLDHNFMTCSIPTHRLFVHVRRLVSHGHK
VGVVKQTETSAIKASGSNRNALFARQLSALYTKSTLVGEDVNPVCKLGDVEEGGCGDVVL
DPPDSFLLCISETWDKLKKQLTVGLVAVQPSTGDVLLDCFPDGQYRSELEGRVLKINPVE
ILVPSDLSEQTSRLLQSIANASAQADDRVRVEKRDSAQFEFASAMNTATEFYCHTQEKGS
RSLSSVASLESPVICCLGPLILYLQEFNLERVLRSESSFRRLSCESQNMALSAATLRNLE
ILNNQTDGGVKGSLLWVLDHTRTPFGRRLMRKWVSQPLTDSQSISERQDAVQEILESHSP
TLNSIKSLLSHLPDLERGICSIYHKKSSTQEFYLISSSLSRLGLELQALLPAIQSQISSA
LLRSLLLDTPDLLAPAHSHLKVLNEKAAKSGNKTELFSDLSGFPVLQERREQIQSVLNEI
QDHRKEVRLTLKAPALDYTTVSGQEFLIEVKNSLSSTVPPDWVKISSTKAVSRYHSPFLV
ERYKKLLQLREQLLLDCQREWTNFLDQFGEHYHTMKRAISHLATMDCLFSLAEVAKQGDY
CRPEVCEGQCQIVIRDGRHPAIDLLMGEHNQYVPNHTELQGDGRRTMIITGPNMGGKSSY
IRQVALICVMAQMGSYVPASEARLGILDGIYTRMGASDNIYKGRSTFMEELTEASEIISR
ATECSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPLCELERVYPQHV
SNYHMAFLLNEPDIDTDTDDGEVQPEFITFLYQLTQGAAGRSYGLNVARLADIPDPILHS
AARKAQELESMVNARRKNKKILSDLLSISDRSSFMEWLQSSS
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagtctgtgaagaagtcctgcaccacccagacctccatcagcaggtacttcgga
gggctgagcagcagcagcagcagcagcagtgcctccaacactcagtgtgggattaaccaa
aaccctgctgtgcaccagctttcaagaggcaagaagaaactttctcctgatgatgatttt
ggtttgtcaccaaaacgagccaggcttcctgtgcaagaccaacaggtggaggatttggac
tgtgagctggcaccctgccaggacactaaagagacgacgcaaacctctaggcgaggagca
gccgccctctgcgcctccaccttggagaggctgaaaggcttcacctgctcagctgagccc
agtatcgggcacagcgacgctcagaggggagaaaagaggacagagggggctgacagtaaa
atcagtgaaagaggaagcagcggtgtgtctccttgggacgttaaagatcaaaacagcgac
aacaaaggacttcagccgacagaggaggagcgtgaggacgaagaggaggaggctgaagaa
aaggagagctcagttctggctgctacaaaacaggggttccgcttttctcagtttgccaag
ccaggaggaggaaggagtgcagagcagagtcccccatcagagtctagcgccccctccaga
cgctcaaagagtgtgtacactcccctggagctgcaggtcatccagctgaaacagcagcat
aaggatgcgttgctggctgtggagtgtggatacaagtacaggttctttggggaggatgca
gagattgctgcaaaggagctgaatatcgtctgtcacctggatcacaacttcatgacgtgc
agcatccccacacaccgtttgtttgttcatgtcagacggttggtgtcccacggacacaag
gttggtgtggttaagcagacggagacgtcggcgatcaaggcctcagggtccaataggaac
gctctgttcgctcgtcagctgagtgctctgtacaccaagtccactctggtgggagaggat
gtgaaccctgtctgcaaacttggggatgtagaggagggaggctgtggtgacgtggtgttg
gacccgcctgacagcttcctgctgtgcatcagtgagacctgggacaaactgaagaagcag
ctcactgtggggctggtggcagttcaacccagcacaggcgacgtgttactggactgtttc
cctgatggtcagtatcgctctgagctggagggtcgtgtcctaaagatcaaccctgtggag
atcctggtgccctctgacctctccgaacaaaccagcaggctcctgcagagcatcgccaat
gcaagcgctcaggctgatgaccgggtgagagttgagaagagggacagcgctcagtttgag
ttcgcctctgcaatgaacacagccactgaattctactgccacacccaggagaaaggctct
cgctctctgtcaagtgttgcatccctggagagcccagtgatctgctgtctggggccgctc
atcctctacctccaagaattcaacctagaaagagttctcaggagtgaaagctcattccgg
cgtctgtcctgtgagtcgcagaatatggccctcagtgccgccaccctcaggaacctcgag
atcctcaacaatcagacagatggtggtgtgaagggcagtctgttgtgggtgttggaccat
actcgcactccgtttgggaggagactgatgaggaagtgggtgagccagcccctcacagac
tctcagtctatctcagagaggcaggatgctgtgcaggagatcctggagtcacactctccc
actttaaattccatcaaatccctgctgtcgcatttgcccgacctggagagaggcatctgc
agcatataccacaaaaagtcttccacgcaggagttttacctcattagcagcagtctctct
cgcctggggcttgaactgcaggccttgctgccagctatccagtcacagatcagctctgcg
ttgctccgaagcctcttgttggacactcctgacctgctggctccggcccacagccacctc
aaggtgctcaatgaaaaggccgccaagtctggaaataagacagagctgttctcagatctg
tctggcttcccagtgctgcaggaaaggagggagcagatccagtccgtcctcaacgagatt
caagaccaccgcaaagaagtccgactgacgctgaaggcacctgcgctggactacaccacc
gtctctggacaggagtttctgattgaggtgaagaactcgctgtcgtccactgttccacct
gactgggtcaaaatcagcagcaccaaggcagtcagcaggtatcactctccgttcctggtg
gagcgctacaagaagctgctgcagctccgagagcagctgctgctggactgccagagagag
tggaccaatttcctcgaccagtttggggagcactatcacaccatgaaaagggctattagt
cacctagcaaccatggactgtctcttttcattggctgaggtggctaaacaaggggactat
tgcaggccagaggtgtgtgaagggcagtgtcagattgtcatcagagacggcagacatcct
gccatcgacttactgatgggagagcacaaccagtatgtgcccaaccacaccgaactacag
ggtgatggcaggagaactatgataatcactggccctaacatggggggtaagagctcctat
atccgccaggtggccctgatctgtgttatggctcagatgggctcttacgtcccggcctct
gaggcccgcttgggcatactggacggcatttacaccaggatgggagcttcggacaacatc
tacaaagggcgcagcacgttcatggaagagctgaccgaagcctcggagatcatttcccgt
gcaaccgaatgttcattggtcatccttgatgaactgggacggggcacaagcacccatgat
gggattgccatcgcctatgctaccctggagtacttcatcagagatgtgaaatccctcacc
ctgtttgtgacccattaccctcctctgtgtgagctggagcgggtctatcctcaacatgtg
tctaactaccacatggctttcctactcaatgaacctgacatcgacactgacactgacgat
ggagaggttcagccagagttcatcactttcctctaccagttaactcaaggagctgcaggg
cggagctatggcctgaatgttgcccgattggctgacatcccagatcctatactacactct
gctgcacgcaaagcccaagagcttgagagcatggtcaacgccaggaggaagaataagaaa
attctctcagatcttttgagcatttcggacagatcgtccttcatggagtggctgcagtca
agctcttga
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