Epinephelus lanceolatus (giant grouper): 117252302
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Entry
117252302 CDS
T07331
Symbol
pdlim5a
Name
(RefSeq) PDZ and LIM domain protein 5a isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117252302 (pdlim5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ely04990
]
117252302 (pdlim5a)
Domain-containing proteins not elsewhere classified [BR:
ely04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
117252302 (pdlim5a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
zf-FPG_IleRS
Motif
Other DBs
NCBI-GeneID:
117252302
NCBI-ProteinID:
XP_033474974
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Position
4:21626536..21720644
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AA seq
571 aa
AA seq
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MSSNYSATLLGPAPWGFRLQGGKDFNMPLTISRLTDGGKAAKGGIGIGDLVLSIDGIATE
GMNHLEAQNKIKSCTGNLSLTLQKAPSVTKSPPPVAPKDNRSDIIKPVALTHPPPPSHPH
PHSSSPSTIHYNKAPRPFGCCAESGYPPSQSPSTPFIPSPSSAFTPASSQTSSPPPPPPP
VSDPSSSSSSSPPVLVAPQPSVYNTPINLYSTENACEVAMGQRRGLLESQGGALPLQFNG
VPRKHIVDTDIHFYHVPTHADASRKRIMEDTEDWRPRTGTTQSRSFRILAQITGTERAQD
EEADTAKKSNEEGEEPELNSHESAVIKTMTKGPAAIRGHGPQAGLITPSFGMKGNGSASV
PRGPVPARPLPQPHPEDTLVQMAEHIPAGTRTPMCAHCIMVIRGPFLVAMGKSWHKEEFN
CAHCRTSLADIGFVEERGSVYCEHCYEEFFAPTCSRCQAKILGEVINALKQTWHVYCFLC
ACCQQPIRNNTFHLEDGEPYCEQDFYSMFGTGCHGCEFPIEAGDKFLEALGYTWHDTCFV
CTVCCTTLEGQTFFSKKDKPLCKKHAHTLKI
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaactacagcgccactctgttaggccctgccccctggggcttcaggctgcag
ggagggaaggacttcaatatgcccctcaccatctccaggctgacagatggtgggaaggcg
gctaaaggtggcattggcattggagacttggttctgtctattgacggcatcgccacggag
ggcatgaaccacctggaggcccagaacaagatcaagagctgcactggcaacctcagcctc
accctgcagaaggcccccagtgttacaaaatctcctcctcctgtggcaccaaaggacaac
agatcagacatcataaaaccagtggccctcacccatccccctccaccatctcacccccac
cctcactcctccagcccctccaccatccactacaacaaggccccccgacctttcgggtgc
tgtgcagagagtgggtaccctccctcacagtcaccttccactcccttcatcccatcccca
tcctctgccttcactcctgcctcctcccaaaccagctctcctcctccccctccacctcct
gtctctgacccatcctcttcctcctcctcctccccgcctgtcctcgttgcgccacagcca
tcagtgtataacacaccgatcaacctctactccactgagaacgcatgtgaggtggccatg
gggcagaggcggggcctgttggagagtcagggcggagccttgcctttgcagtttaatgga
gttcccaggaagcacattgtggacacagacatccatttttaccatgtgcccactcatgct
gatgccagcaggaagcgcataatggaggatacagaggactggcgccctcgcaccggcacc
acccagtccagatctttcaggattctggctcagatcaccggtaccgagcgtgctcaagat
gaggaagctgacacagccaagaagtcaaatgaagagggagaggagccagagctcaacagc
catgagtctgcagttatcaagaccatgaccaaaggacctgcagcaattcggggtcacgga
ccacaggctggtttgatcaccccatctttcgggatgaagggtaatggaagtgccagcgtc
ccgaggggtcctgtcccagcccgacctttacctcagccccaccctgaggacaccttggtc
cagatggcagagcacatccctgctgggactcgcacgcccatgtgtgcccactgcatcatg
gtcatcagggggccatttttggtagcaatggggaaatcatggcataaggaggaatttaac
tgtgcccactgccgtacatccctagcggatataggctttgtggaagaacggggatctgtc
tactgtgaacactgctatgaagagttcttcgctcccacatgcagccgttgccaggccaag
atccttggggaggtgataaacgccctcaaacagacatggcacgtctactgctttctatgc
gcctgctgtcagcagccgatccgaaacaacaccttccacctggaggatggagagccgtat
tgtgaacaagacttttacagtatgtttggaaccggctgccatggctgtgagttccccatt
gaggctggagacaagttcttggaggcccttggttacacctggcatgacacctgcttcgtc
tgcacagtgtgctgcaccactctggaaggccagaccttcttctccaagaaagacaaacct
ctttgcaagaaacatgctcacacactgaagatatga
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