Epinephelus lanceolatus (giant grouper): 117253141
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Entry
117253141 CDS
T07331
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03008
Ribosome biogenesis in eukaryotes
ely03013
Nucleocytoplasmic transport
ely03015
mRNA surveillance pathway
ely05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117253141 (nxf1a)
03015 mRNA surveillance pathway
117253141 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
117253141 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117253141 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ely03019
]
117253141 (nxf1a)
03009 Ribosome biogenesis [BR:
ely03009
]
117253141 (nxf1a)
Messenger RNA biogenesis [BR:
ely03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117253141 (nxf1a)
mRNA cycle factors
Stress granule specific factors
117253141 (nxf1a)
Ribosome biogenesis [BR:
ely03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
117253141 (nxf1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
UBA_8
LRR_8
RRM_NXF1-2
LRR_9
LRR_6
Citrulline_exp
DUF8346
DUF3592
Motif
Other DBs
NCBI-GeneID:
117253141
NCBI-ProteinID:
XP_033476397
LinkDB
All DBs
Position
7:28064504..28078247
Genome browser
AA seq
664 aa
AA seq
DB search
MDHLTLSQRSYPNLAVVTRVLNQDRGDFLVRREVRSTGYMVNGEHDDRTAPQFRNRKGRG
PHKGRSYDRSRRDRQRGSHAGGFGGPGPRSRLDDPDPDVTMSDSSQDSSSQHRFTPYGRH
KWKAGDGRFDRDRRGKGGGGGRGGFRDRPGGNGGGGKNRSGWYKVTIPHGRKYDKNWLLT
ALRNICSVPYTPVQYHVDHNRAHFYVDDSSAANALHKCSHKITDTDGYKVEVHVNPSAPP
SFLLAELKPEHLEHLKQCMAKRFDGSQQALDLNNIRTDPDLASQNIEVILNRKTNMEAVI
KIIEENIPELTCLNLSNNRIHKLDELTDLVSKAPNLKTLNLSHNELKSDRELDKVKGLKL
VELWLNRNPLCDLFKDQASYISAVRQRFPRLLKLDGHDLPAPIGFDVETPTTIPPCKGSC
FGSDEIKALILRFLQQYYSIYDSGDRQPLLDAYHDGASLSLTTPYSTQNPSRSSLGEYHK
DTRNLKRIKDSTIRFRLLKHTRLNVVAFLNELPKTQHDIASFTVDVNTYTNTLLSFTVSG
VFKEVAVDGKSRESTMAFSRVFITVPAGNSGLCIVNDQLFIRMATTEEIRRAFVAPAPTP
SSSPVPTLTAPQQEMLTAFSLKSGMNLEWSQKCLQDNEWDFNRAAQIFTQLKTDGKIPDV
AFIK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggatcacctgactttgtctcagaggagctaccccaacctggctgtggtgacacgtgtg
ttgaatcaggaccgaggggactttttggtgaggagggaggtcaggagcactggttacatg
gtcaatggagagcatgatgacagaaccgcaccacagtttcgcaaccgtaaaggcagaggc
ccccacaagggtcggtcttatgacaggtcccgcagagaccgccaacggggcagccacgct
ggaggctttgggggtcctgggccacggtctaggctcgacgatcccgatccagatgtaacc
atgagtgacagctctcaggacagcagctcccagcacagattcaccccgtatggaagacat
aaatggaaggctggagatggacgctttgacagagaccggcgaggcaaagggggaggaggt
ggaagaggcggctttagagaccgacctggaggcaatggaggaggggggaaaaaccggtcg
ggctggtacaaagtaacgataccacacggaagaaaatatgacaagaactggttattgaca
gctcttaggaacatctgctcagtgccctacacacctgtacagtaccatgttgatcataac
agggcccatttctatgtggatgattcctctgctgccaatgctttgcacaaatgttctcac
aagatcacggacacagatggttataaggtggaagtgcacgtcaaccccagcgctcctcca
tccttcctccttgcggagctgaaacctgaacacttggagcacctgaagcaatgtatggcc
aaacgttttgatggctcccagcaagcattggacttgaacaacatccgaacagacccagac
ttggcgtcccagaacattgaagtcatcttgaataggaagacaaacatggaggctgtcatc
aagatcattgaagaaaacattccagagctgacatgcttgaacctgagcaacaatcgtatt
cacaaactcgatgaactcaccgatttggtttccaaggcgcccaatctgaagactctcaac
ctctcccacaatgagctgaagtcagaccgggagctggacaaagtgaaaggcctgaagctg
gtggagctgtggctgaacaggaaccctctgtgtgacctcttcaaggatcaggcctcatac
atcagtgccgtgcggcagaggtttccccggcttctcaaactggatggtcatgacctccct
gcgcccattggattcgatgtggaaacgcccaccactatccccccctgcaagggcagttgt
tttggctcagacgaaatcaaggccctcattctccggttcctgcaacagtactacagtata
tacgactctggggacagacagccactcctggatgcttaccatgatggagcatcgttatcc
ctcacaacaccttactccacccagaacccctccaggagcagtctgggagaatatcacaaa
gacactcgaaacctgaagagaatcaaagactccacgatacggtttcgacttctgaagcat
acacgactgaacgtggttgctttcctcaatgagttgcccaagactcagcacgacatcgcc
tcctttactgtcgacgtgaacacctacacgaacacactactgtcgttcacagtgagtgga
gtcttcaaagaagttgctgttgatggtaaatctcgagagtccaccatggctttctcccgg
gttttcatcactgtcccagcagggaactctggtttgtgcatcgtgaacgaccagcttttc
atccggatggctacaacagaggagatccgccgggccttcgttgctcccgccccaactcca
tcttccagccccgttcccaccctcactgcaccgcagcaggagatgctcacagccttctca
ctgaagtctggcatgaacctggaatggtcccagaagtgtctgcaagacaatgagtgggat
ttcaacagagctgctcaaattttcactcagttaaagacggatggcaagatccccgacgtt
gcgttcataaaatga
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