Epinephelus lanceolatus (giant grouper): 117255301
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Entry
117255301 CDS
T07331
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117255301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ely03041
]
117255301
03009 Ribosome biogenesis [BR:
ely03009
]
117255301
Enzymes [BR:
ely01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117255301
Spliceosome [BR:
ely03041
]
Complex A
U2 snRNP components
U2 related factors
117255301
Complex B
117255301
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
117255301
Ribosome biogenesis [BR:
ely03009
]
Eukaryotic type
90S particles
Helicases
117255301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Flavi_DEAD
nSTAND3
AAA_29
AAA_7
T2SSE
RSB_motif
Motif
Other DBs
NCBI-GeneID:
117255301
NCBI-ProteinID:
XP_033479940
LinkDB
All DBs
Position
6:21234326..21243740
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AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSEGRDRDRDRDREDRSRDRDRDRDRDRDRDRDRDSKPPSVP
SNSTAPVPCLAPIKQMAMQQQINPFTNLPHTPRFYEILKKRLQLPVWEYKESFSDIITRH
QSFVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRPDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYTNIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYEMSNFPQCEAKRQLERIIAKLESKEYSQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacatcgcttggacttgggtgatgactactcctctagtaagaagaggtct
gaagggagagacagggaccgggacagagaccgtgaggatcgctccagggacagggaccga
gatagggaccgggacagggatagagaccgggatagagactcgaagcctcctagtgtcccg
tctaacagcacggcacctgtgccatgccttgcgcccatcaagcagatggctatgcaacag
cagatcaacccattcaccaacctgccgcacacgccgcgcttctacgagatcctgaagaag
aggttacagcttccggtgtgggagtacaaggagagcttcagcgatatcatcacacgtcat
cagagctttgtccttgttggtgaaactggttctgggaagacaacacagatcccacagtgg
tgtgtggacatggtgagaggtttgcctgggcctaagcgggcagtagcctgtactcagccc
aggagagtggcagctatgagcgtagctcaaagggtggcagacgaaatggatgtcatgctt
ggacaggaagtcggctactccattcgatttgaggactgcagctctgctaagacaattctc
aagtacatgacagacggtatgttactaagagaagctatgaatgacccgctgctggagcga
tatggtgtcatcattctggacgaggcccacgagcgaactctggccacagacatcctgatg
ggagtactcaaggaggtggtgcgtcaaagaccagatctgaaggtgatcgtcatgagtgcc
acgctagatgctggaaagttccaagtgtactttgacaactgtcctctcctgactatcccc
gggcgtacacaccctgtagagattttctacactcccgaaccagagcgggactatctcgag
gcagcgatccgcactgtcatccagattcatatgtgtgaggaggacgaaggtgactgcctt
ctctttctcaccggtcaggaggaaattgatgaggcctgcaaacggatcaagcgtgaggta
gatgaccttggacctgaagtcggagacatcaaaatcattccactgtattccacattgcca
ccacagcagcagcaacggatcttcgagcctcctcctccgaggaagcccaatggtgcaata
ggaagaaaggttgtggtgtcgacaaacattgctgagacctctcttacaattgatggtgtg
gtgtttgtcatcgatcctggatttgccaagcaaaaggtttacaatccccgtatcagagtt
gagtctttgcttgtgacggccatcagtaaagcttctgcccagcagagggcgggacgagct
ggcagaacacgtccggggaaatgtttccgcctgtacacagagaaggcctacaaaacagag
atgcaggataacacctaccctgagattcttcgatccaacttgggatctgttgtgctgcag
ctgaaaaagctgggtatcgatgaccttgtgcactttgacttcatggatccaccagctccg
gagacgctgatgagggcccttgaactgctgaattacctggctgctctcaacgatgatggt
gacctgacagagctcggctccatgatggcagagtttcctttggacccccagctggctaag
atggtcattgccagctgcgagtttaactgctctaacgagatcctttccattactgccatg
ctgtcagtcccacagtgttttgtccgccccacggaggctaagaaggcagcagacgagtcc
aagatgaggtttgctcacatcgacggagaccacttgacgctgctcaacgtctaccacgcc
ttcaaacaaaaccacgagtccaaccagtggtgctatgacaactttgtcaactaccgttcc
ctgatgtctgctgacaacgtgcggcagcagctgtccaggatcatggaccgcttcaacttg
ccgcgccgaagcacagagttcaccagcagagattattacaccaacatccgccgagcgctc
tgcaccggcttcttcatgcaggtggctcatttggagcgcacaggtcattacctcacagtc
aaagacaaccaagtggtccaactgcacccatccacagtcctggaccacaagcccgagtgg
gtgctctacaacgaatttgtcctcaccaccaaaaactacatccgcacttgcacagacatc
aaaccagagtggctggtgaagattgcaccgcagtactatgaaatgagtaacttcccacaa
tgtgaagctaagagacagctggagcgaatcattgccaaactagagagcaaggagtattcc
cagtactga
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