Epinephelus lanceolatus (giant grouper): 117255516
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Entry
117255516 CDS
T07331
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117255516 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ely03019
]
117255516 (parn)
Enzymes [BR:
ely01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117255516 (parn)
Messenger RNA biogenesis [BR:
ely03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117255516 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
Motif
Other DBs
NCBI-GeneID:
117255516
NCBI-ProteinID:
XP_033480401
LinkDB
All DBs
Position
6:30698370..30709314
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AA seq
683 aa
AA seq
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MEVTRQNYKDSLNTVYSAIDEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMEFLLFQFGLCTFKYDQTKSKYITKPFNFYIFPKPFNRTSPDVKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQEEEAQLREQTEERRNQHANGVGTPSYISPSSSKGPAHVPEEHKD
FINRVIEKVEALFSNSEKTLDLEPCTGFQRKLIYQTLNWKFPKGLHVETVETDKKERYIQ
VSKVDEEERKRREQQKQEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQF
YCPLPEDLPDFKEVTMCVFPRLLDTKLMASTQPFKEMITNTSLAELEKQLKESPFKSPQV
ETAEGFPSYDTAQEQLHEAGYDAYITGLCFISMANYLGSFLTPPKAYISARSKLIEPFFN
KLFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQTDQVQIAMNTSRYAESYRIQTYAEYIQGKQQDKEKLGQTPRSWGEDGWVKPHY
TSATSAGFGYPRGLRKRSISPVQGEQGLGDTPVTDGWSHYSYPDSTGSKKMKTDDKSGQA
NAEAIESKTSEGWLKTAEPSDSSGSSPIPDDDERQTPEGSDAEGTVTWQQAPTAHGRKGQ
KNKKKKSEGAESTTSLFEVPEVW
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgccagaattataaggacagtttaaacacggtgtacagcgcgatagac
gaggctgacttccttgccatcgatggagaattttcagggataagcgacggtcctaatgtc
agtgcactcaccaacgggctggacacaccggaggagcgatacacaaagcttaaaaagcac
tccatggagtttctgctgttccagttcggattatgtacattcaagtacgaccagacaaag
tcaaagtatatcacaaagccttttaatttttatatattcccgaaaccgttcaacaggacg
tccccagacgtaaagttcatctgtcaaagttccagtattgacttcctggccagtcaagga
tttgacttcaacaaggtgttctgtcatggaatcccatacctaaaccaagaggaggaagcc
cagctgagggagcagacagaggagagaagaaatcagcatgctaatggtgtaggtacgccg
tcctacatctcaccatcctcctctaaaggccctgcacatgtccctgaggaacataaagac
ttcatcaacagggtgatagagaaagttgaggccctcttcagtaactcagagaagaccttg
gacttggagccatgcactgggtttcagaggaagctgatataccagacactgaactggaaa
ttccccaaggggctacatgtggaaactgtggaaacagacaagaaggagcgatacatccag
gtcagcaaggtagatgaagaagagaggaagaggagggaacagcagaaacaagagagagag
caggaggagctaaatgatgctgttggcttctccagggtcatccatgccatctctaaatct
ggtaaactcgtggttggtcacaacatgctcttggatgtgatgcacaccatccaccagttc
tactgccctctgccagaggatctcccagactttaaagaggtcacgatgtgtgtcttccca
agacttctggacacaaagctgatggcttccactcagccttttaaggaaatgatcacgaac
acctctctggcagagctggagaaacagctgaaggagagccccttcaagtcaccacaagtt
gaaacggcagaggggttccccagttatgacacagcccaggagcagctccacgaggccggg
tacgatgcctacatcactggcctctgtttcatctcaatggccaactacctgggctctttc
ttgactccaccaaaagcttacatctctgctcgctccaaactaattgagcctttcttcaac
aagcttttcctgatgaggataatagacattccctacctcaacatcacaggaccagacttg
cagcctaaaagagaccatgtcctgtacgtcaccttcccaaaagagtggaagactagtgac
ctctaccagctcttcagtgcctttggaaacatccaggtttcatggatagatgacacatca
gcatttgtgtccctgagtcagacagaccaggtgcagatagctatgaacaccagccgctat
gcagagagttacaggatccagacgtatgcagagtacatccagggtaagcagcaggacaag
gagaagctcggccagacacccagatcttggggagaggacggctgggtgaaacctcactac
acctctgctacttctgctggttttggataccccaggggtttgaggaaacgcagcatcagc
cccgttcagggagagcaggggctcggagacactccagttacagacggctggagtcactac
tcatacccggatagcacaggcagcaagaagatgaaaactgatgacaaaagtgggcaggca
aatgccgaagctattgagagcaagacctcagaaggatggctcaagacggcagagccatca
gattcatcagggtcaagtccaatccctgatgatgatgagaggcaaactcctgaaggcagt
gatgctgaggggacggtcacctggcaacaagctccgacagcccatgggaggaaaggtcaa
aagaacaagaaaaagaagtctgaaggtgctgaatctacaacgtcactgtttgaggtccca
gaagtttggtag
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