Epinephelus lanceolatus (giant grouper): 117255925
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Entry
117255925 CDS
T07331
Symbol
dchs2
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-23
KO
K16507
protocadherin-16/23
Organism
ely
Epinephelus lanceolatus (giant grouper)
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ely04515
]
117255925 (dchs2)
Cell adhesion molecules [BR:
ely04515
]
Cadherins
Cadherin related
117255925 (dchs2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
RET_CLD1
PepSY
CADH_Y-type_LIR
Motif
Other DBs
NCBI-GeneID:
117255925
NCBI-ProteinID:
XP_033481069
LinkDB
All DBs
Position
6:28029900..28071298
Genome browser
AA seq
3277 aa
AA seq
DB search
MWRGAMGHKNAATWLLRTVFLSLLCAHSLGQVFNLTLSVKEGLPAKTIVGDLGAGLSRPS
TGFFISESRDSYVFRDLEIDADTGIISTAVVLDRESRDKYEFVAATLTGEMIKVKLEVED
VNDHSPVFPSKEVDLEISELSPPGSRFQLEGAKDEDEGEFGTQGYRITDSDMGQLFHLEY
RSGSENHPTLDLILTSKLDRETQDFFSFPIEAFDGGIPARTGTLQVNIHVLDENDNPPVF
NQTEYHAALPENALLMTSVCQVHATDLDLGNNGHITYEINRRQSDPNEVFSIDENSGVVY
LNKPLDYETQAFHELIISARDNGAQPEYSSTFVGVKVLNVNDNSPTINVLFLSETGDAVV
SEAAAVGDYVARISVSDPDFRDEMITVTLEEDDGKFTLKQTDDFLYALCVNAELDREEKD
LYELKVQATDFGSPPLSSEMVLLLRVADTNDCHPVFEKDVYIISISEDAPQGSSLIQIRA
RDADEGVNSDVKYSMLKSNHDSLLSIDPESGLVTTAAALDRETQMEVWFLVVAADGGEPA
LSSTATVTVLVEDVNDNEPVFQQQLYNVSIPEHSDVGSCFLQVVATDADSPEFGTLLYSL
SDGFDMQDQHPLFKIHPQTGELCVSQDIDRDSGQMVHDILIKAEDPGGLSAQTYVHIEVE
DLNDNAPVFNPDEYTISISSHAQPGTEILNVIASDRDSGRFGQVTYNVVPGDMSSLFALD
QQTGMLLLSSTLTHLGAASVKLSITAQDGEGLTSVKPAEVTINVLQSAQAPAVFQRSRYT
FTVPEDAPPGTPVGTVVATNPADSLDSVSYRISSGDPQGLFSVHPKSGLISNIKPLDHES
QPYALLVLQSYTDTSPVYSTTQVNITIADINDNSPVFPKLSDTITVSQNTLPGTVLFIAH
AHDHDSGANGRVQYHLKSTRDGTFVVDHNLGTVTLNQSLQVDHQQRYSLEIVAKDEGDPS
QSSTLTLTVNVDRTVAEDSLAFETLVXQVEIGEGYRKDLRVIQVRAHRSRGAHMSNSGLT
YALEAEAGFPPAPFRIHPKTGWLYLSNNLDYESESMFRFRVLATAREASLENMTATATVI
VLVLDINDNAPVFSSEVYYFTVSEGSSPQGLVGTVHATDKDSGKNAQLSYILLTDGKFFR
INAKTGEIINWVALDREQHSLHSLKVMVTDQGRPRLNATATIHILVMDINDNTPQFTHLP
ASKELNVQIWAGLSAGSFVTNMFAKDLDAGENGTVTFSMVTDDLEDEGFGHFEIDSESGD
IRTTELFTQGAASYYTLRVTAKDGGATPLEDTAVIHVQVHGLEALYGHSDHQIVRRFTVK
EDTEPATVIGSASVSYEGRFHYSISEGDGNIHFGIDGSSGDIYINQPLDYESAMQYFLMV
RAEDVGHAPGVNVSVLVSVIVEDVNDHTPWFPDKLVMFGLWEDTAVGSLAFAFHARDADG
TFANSALRYSLTFDPELSRSSSRFPFQINPHTGSLTITAPLDRETTPSFAFTVTATDQAK
RKAERKQTSVTAQVFLLDVNDNRPVFVSADTVQVMEDAEVGSLLHHFVAIDGDMGENGVV
SYVIIAGNKRGFFTLEEKTGLLFLSAPLDYETQRFHRLTIRAVDHGMPSLSSTQTLTVEV
GDVNDQTPVFSQSVYNASVAENRDPGEAVIRVSATDKDSEENAVVWYSLLPGPGYELFSI
NPYTGLITTTSYLDREQQHHFTLRIQARDSGTRPLSGTATVLCAVLDDNDNPPEFMQSSF
QISLPENLPPGVVHTAQASDPDHGENGTIHYSILGEDYRGRFTINSHTGAVSTTQVLDRE
DKQNYTLTILAHDYGPTPLSSSTQLQLVLLDQNDNIPSFTRKSYHASISEGLPAGAEVLH
VSAFDPDEGSNGEVTYSLTEDSNQGAFSVDAFTGLIRTTRSLDRESRAQYTLRAVATDGC
TQGPLSSVASVTIQVEDVNDNVPVCEQNPMNAWVSMRTLPNQIVTTVTATDGDQGDNGTI
HFMLSDEENLFDINSESGEISLRRRVRAGFSGRKLQVVVSDRGRPALISTCLIFIHLKGE
HEGLQFTNKVYNATVKENSRAGTWIAKVEASDQSNSRQRITYTIFSGNENHIFSINRHTG
EIRVQKDNSLDFEVSPHIHLVVLADSGLQTAHCRVSISLLDMNDNAPVFEHGNYRTAVWE
GQVHNTYIMQVFASDADSGMNGQIEYSIVSGNSNQAFVLDSVRGILATNVLLDREITPSY
KLVLQATDRGNPPLSTTTTIRVQVVDVNDNSPTIPPMEPVVIAENLPAGYMVTQVTANDV
DLSSTITYSFSDNSSTNAPFAIDRYTGVITLTRALDYEEETEYTLTVWASDSLHQTTGEV
KVQVLDVNDNAPVFTKVSYQVELSELVSADTLVLSVSATDRDSGLNGKITYRLLSSPLQG
FYMEPENGSVFTNKPLKAITNSNLIHLLVEAKDAGDPVQSTLTSIDVLILDTNDHAPLFH
QDMYTLTVPEDTPTDTSLLTLSAEDQDWSPENTHLDYGIIGGNEEKRFCLEVKMVQVENQ
MRNVGKLILCNPLDRETTESYALTVSVSDRGTPPLNNSAVVMVTVTDCNDNAPVFSSTGY
HAQVSENSHVGTKLVQVSAQDPDLGINGLLRYDIVSGNSKGHLKLDPHSGVLVVNHSLDY
EEDSKYTLTIRASDGGESSEERKVAFTVVFITVLDVNDNTPYFMFPVVNCSVLENLPAFT
HTCSVHAVDNDLGPYGQLTYSIVSSCFMDYGSGSPEKKEAFVIDPLTGDIHTRQTFDYER
ESEYCFVVEARDKGDKAATVRVQVTIKGVDEFSPVFTQKQYHFLLPQNAKPGETVGYVMA
MDHDGGVDGVVEYSLVKSSPFFSINKTIGSIFVSGPVYRRRGSHASEDMVELVVSAGSPR
VASRTTACLVYVNISSSAEALTGVPLDAHMLSLSVSLIMFLFVLLIFVGLVLRYKIKEAA
IKKAAAIAANLNHGTGSFGRSNSQRSISLQEIKRPSILVTKRDVSHPYNHNPSDSSGRGS
AEGETAEDQEIKWINQHPCRKRDESVPGNQAAEIPDSALPGDNISCHSVDVGPQHILSIN
KRLVSGMASTESLHHFKEEGGGEGLLPAILRVRDLEESMRTNGYAPLSEAQASADSLSSL
VCLEEQLQGSYSWDYILDWEPRYQTLASVFTDIGMLPDEELQGGREDLAAEASCLMHPPP
LITGVAQPGIRTVPPRKPGRVPSLRRKPSFPKYAYSPLARNTGLTPSAMTPNFSPSLSSL
TIRTPSASPVVSETGVGGIKLDSGPLTASLLEAEIQV
NT seq
9834 nt
NT seq
+upstream
nt +downstream
nt
atgtggagaggagcaatgggtcacaaaaatgccgcaacttggctccttcggacggtcttc
ctgtcgctgctttgcgcgcactcgctcgggcaggtgttcaacctgacgctgtctgtaaaa
gagggtttgcctgctaaaaccatagtcggagatctgggagcggggttaagcaggccaagc
actgggttcttcatctcagagagcagagattcttatgtgttcagagacttggaaatagac
gcggacacggggatcatctccacagctgtggtcctggacagagagagcagagataagtat
gagtttgtggcagccactctcacaggtgagatgataaaggtgaagctggaggtggaggat
gtgaatgatcactcacctgtgtttccctcaaaggaggttgacttggaaatatcagagctg
agccccccggggagtcgatttcagcttgaaggagctaaagatgaggatgagggtgagttt
ggtacccagggatacaggatcacagacagtgacatggggcagttattccacttggagtat
cgaagtggatctgagaaccacccgaccctggatctcatcctcaccagcaaactggacaga
gagacacaggacttcttctccttccccattgaggcctttgatgggggcatcccagccagg
acggggactcttcaggtgaacatccacgtcctggatgagaacgacaaccctccagtgttc
aaccagactgagtatcacgccgcgctgcctgagaatgctctgctcatgacctctgtgtgt
caggtccacgccactgacctcgacctgggcaacaacggccacatcacttatgagatcaac
aggcggcagagtgacccaaatgaggttttctcgatcgatgaaaacagcggggtggtgtat
ctcaacaagccccttgattatgagactcaggcttttcatgagttgatcatcagtgcgaga
gataacggggctcagcctgagtacagcagcacgtttgtgggtgtgaaggtgcttaatgtc
aacgataacagtcccaccatcaatgtgctgtttctcagcgagacaggagatgcagtggtg
tcagaggcagcagcagttggggactacgttgcccggatttcagtgtcagaccccgacttc
agggacgagatgattactgtcacacttgaggaggatgatgggaagttcaccctgaagcag
acggatgattttctgtatgctttatgtgtcaatgcagagttagacagggaggaaaaggat
ctgtatgagttaaaagtgcaagccacagattttgggagcccacccctgagcagcgagatg
gtcctcctcctgagggtggctgacaccaacgactgccacccagtctttgagaaggacgtg
tacatcatcagtatatctgaggacgctcctcaggggagttccctcatccagatacgggcc
cgagacgcagatgaaggtgtcaactcagatgttaaatactctatgctcaagtccaaccat
gacagcctgctcagcatcgaccccgagtcgggcctggtcacaacagctgcggctctggac
agagagacacagatggaggtttggttcctggtggtggcggctgatggaggggagccggct
ctgtcatccacggctacagtcactgtgctggtggaggacgtcaatgacaacgagcctgtg
ttccagcagcagctgtacaacgtgtccataccggagcacagtgatgttgggagctgcttt
ttacaagttgttgccacagacgcagacagccctgagttcggcacactgctctactctctg
tctgatggctttgacatgcaggaccagcaccctctcttcaaaatccaccctcagaccgga
gagctgtgtgtctcccaggatattgatcgagactcggggcagatggtccacgacattctc
atcaaagctgaagatccaggaggcctgagcgctcaaacgtatgtgcacatcgaggtagaa
gacctgaatgataacgctccagtgtttaaccccgatgagtacaccataagcatcagcagc
cacgcacagcccggcacagagatcctcaatgttattgccagcgatcgagattctggcagg
tttggacaggtcacgtacaacgtcgtccctggtgacatgtccagtttgttcgcactggat
caacaaacagggatgctcctcctgagctccactctgacccacctgggtgcagccagtgtg
aagctgtcaataacagcacaggatggggagggtttgacctcagtcaagcctgcagaggtc
accatcaatgttttacagagcgcccaggctccagctgtgttccagaggtcacgctacacc
ttcacagtgcctgaggacgcaccgcccgggactcctgtggggacagtggtggccacaaac
ccagcagactctctggattcagtctcctaccgaatctcctctggagatcctcagggtttg
ttctctgttcacccaaagtccggcctgatcagcaacatcaaacccctggaccatgagtca
cagccgtacgccctgctggttcttcagtcctacactgacacctctccagtttatagcacc
acccaggtcaacatcactatcgctgacatcaatgacaactcacctgttttccccaaactc
agcgacaccatcacagtgtcccaaaacacgctcccagggacagtgttgttcatcgctcat
gcacatgatcatgacagtggcgccaacgggagggtgcagtatcacctgaaaagtaccaga
gatggtacgtttgttgttgaccacaaccttgggacagttacattaaatcagagtttacag
gtggatcatcagcagaggtacagcctggaaatcgtggctaaagatgaaggagacccttcc
cagagctccacactgaccctcacagtcaacgtggaccgcacggttgctgaagacagcctc
gccttcgagacattggtctaacaggtggagataggtgagggctacaggaaagatttgagg
gtcatccaggtgagggcgcaccggagccggggagcacacatgtcgaactcaggcctcacc
tacgccttagaggcagaagccggatttcctccagctccgtttcggattcacccaaagacg
ggatggttgtatctctccaacaatctggactatgaatcagaatccatgtttcgtttccga
gtgctggccacagccagggaggcctcgctggagaacatgaccgctacggccacagtgata
gtgctggtgctggacatcaatgacaatgctccggtgtttagcagcgaggtctactacttc
actgtgtcagaggggtcgtcacctcaaggcctggtgggaacagtccatgccacggataag
gattctgggaaaaacgcccagctgtcctacatcctgctcacagatgggaagttctttcgc
atcaatgctaaaacaggtgaaattataaattgggtggcgttggatcgagagcagcacagc
ctgcacagtctgaaggtgatggtgacagaccagggccgtcctcgtctcaatgccaccgcc
accattcacatcctggtcatggacatcaatgacaacactccacagtttacacacctgcct
gccagcaaggagctgaatgttcagatatgggccggtctgtcagcaggatcctttgtgacc
aacatgtttgccaaagatttagatgcaggagaaaatgggaccgtcaccttctcaatggtc
acagatgatttagaggatgagggattcggacactttgagattgacagtgaaagtggagac
atcagaacaacggagctgtttacccaaggcgccgcatcgtactacactctgagagtaact
gccaaggacggcggagccacacctctggaggacaccgcagtcattcatgtacaggttcat
ggattagaggctctgtacggccactctgaccaccagattgtgaggcgttttacggtgaaa
gaggacacggagccagccactgttatcggctctgccagtgtttcatatgaagggagattc
cactactccatctctgagggtgacggcaacatccacttcggcatcgacggctcctctggt
gacatatatatcaaccagccgctggactatgagtccgccatgcagtacttcctcatggtc
cgagctgaagatgtaggacacgctcctggtgtgaacgtgtctgtgctggtcagtgtgata
gtggaggacgttaacgaccacacgccctggttccctgacaaactggtgatgttcggcctg
tgggaggacactgcggtcggatcgctggcgtttgcttttcatgccagggacgccgatggg
acctttgcaaacagtgccctccgctactctttgacctttgaccctgagctcagcaggtct
tcatcacgcttcccctttcagatcaaccctcacacagggagcctgactataacagcacct
ttagatcgggagaccacccccagctttgccttcactgtgacagccaccgaccaggcgaag
aggaaggccgagcgtaagcagacgtcagtgacggctcaggtcttcctgctggacgtgaat
gataaccggccagtgtttgtatcagccgacacagttcaggtaatggaggacgcagaggtg
gggagtctgctgcaccattttgtggccatagatggagatatgggtgaaaacggggttgtg
tcctacgtcatcatagctggaaacaaaagaggattcttcacactggaggagaagacaggt
cttctgtttctctcggcccctctggactatgagacacagcgtttccaccgtctaaccatc
cgtgcagtcgaccatggcatgccctcgctctcctccacccagactctgacggtggaggtg
ggggacgtgaacgaccagacgcctgtcttcagtcagagtgtctacaatgccagtgtagcg
gagaacagagaccctggagaagctgtgatcagggtctctgccactgataaagattcagag
gagaatgctgtggtgtggtacagtcttttgcccggccctggctacgagctcttcagcatc
aacccttacactggtctgatcaccaccacctcctacctggacagagagcagcagcatcac
ttcactctcagaatccaggctcgcgacagcgggacacggcctctgtcgggtacggccacg
gtgctgtgcgctgtgctcgatgacaatgacaaccctccggagttcatgcagtcgtccttc
cagatcagcctgccagagaacctgcctcctggggtggtccacactgctcaggcctctgat
ccagaccacggagaaaatggaaccatacactactccattttgggggaggactacagaggc
cgcttcaccatcaacagccacacaggtgctgtcagcaccacacaggtccttgaccgtgag
gacaagcaaaattacacactcaccatattggcccatgactatggccccaccccactcagc
tcctccacccaactccagctggtgctgctggaccagaatgacaacatcccctccttcacc
cgtaagagctaccacgcctccatcagtgagggcttacctgcaggagcagaggtcctgcat
gtaagcgcctttgatcctgatgaggggtccaacggagaggtgacctactctctgacagag
gacagcaaccagggggccttctcagtggatgctttcacaggactgatccgcactacaagg
tctctggatagagagagcagagcccaatacaccctcagagctgtggctactgacggctgc
actcaaggaccactgagctctgtggcatcggtgaccatacaggtggaggatgtgaatgac
aacgtaccagtctgtgagcagaatccaatgaacgcatgggtttctatgaggactctacca
aaccagatagttaccacggtgacagcaacagatggtgaccagggtgacaatgggacgata
cattttatgttgtctgatgaggaaaacctgtttgacatcaacagtgagtcgggggagatt
tcactgagaagacgagtgagagcaggtttctctgggaggaagctgcaggtggtggtttca
gaccgaggacgacctgctttaatctccacctgcctgatcttcatccatctgaagggagaa
cacgaaggactacagttcacaaacaaagtgtacaacgctactgtcaaggagaacagtaga
gctggtacttggattgcaaaagtggaggccagtgaccaaagcaacagcagacaaagaatc
acgtacaccatatttagtggcaacgagaatcatattttctccatcaaccgtcacacgggt
gagatccgtgtacagaaagataactctttggactttgaggtgagccctcacatccacctg
gtggtgctggctgacagtgggctgcagacggctcactgcagggtctccatcagcctgctg
gatatgaatgacaacgcaccagtgtttgagcacggcaactacaggacagctgtctgggag
gggcaagtgcacaacacatacatcatgcaggtgtttgcatctgatgctgacagcgggatg
aacgggcagatcgagtactccattgtatccggtaactctaaccaagcattcgtgttggac
tctgttcgtgggattcttgctacaaatgtcttactggaccgtgagatcaccccctcatac
aagctggttctgcaggccacagacagggggaaccccccgctcagcaccaccaccaccatc
agggtccaagtggtggacgtcaatgacaacagccctaccatcccccccatggagcctgtg
gttatagcagagaatctgccagcaggttacatggtcacccaggtgactgcaaacgacgtg
gacctgagttcaaccatcacctacagcttctcagataacagcagcaccaatgctccgttt
gctattgaccgatacactggtgtgatcaccctgactcgagccctggactatgaagaggag
acagagtacacgctgacagtctgggcatctgattccctccaccagaccacaggagaggtc
aaagttcaagtgcttgacgtcaatgacaacgctccagtcttcaccaaggtctcctaccag
gtggagttgtcagagttggtttcagcagacacgttagttttgtctgtgtccgctaccgac
agagactctggactcaatggaaagatcacctacagactgctttcatctcctttacaaggc
ttttacatggagccagagaacgggtctgttttcactaataagcccttgaaggccatcaca
aacagcaacctgatccatcttctggttgaggccaaagatgcaggcgatcctgtgcagtct
acactcacctctatagacgtgctgattctggacaccaacgaccatgcacctttgtttcac
caggacatgtacacactcaccgtcccagaggacacgcccacagacaccagcctactgaca
ctgtctgcagaggaccaagactggagccctgagaatacccatttggactacggcataatc
gggggaaatgaggagaagcgattctgtctggaagtaaaaatggttcaagttgagaatcag
atgagaaatgtaggaaaactcattctgtgtaaccctttagaccgtgagaccacagagagc
tacgcactaacagtgagtgtgtctgatcgaggaacgcctccactgaacaactctgctgtc
gtcatggtgactgtgacagactgcaatgacaacgccccagtcttttccagcacaggatac
catgcacaggtgagtgaaaacagccatgtcggtaccaagctggtccaggtcagtgctcag
gatcctgacctgggaatcaacggcctgttgcggtatgacattgtctcagggaacagcaaa
ggtcacctcaagctggaccctcattctggcgttctggtggtcaaccactcgcttgactat
gaggaagactcaaaatacaccctcaccatccgagcatctgatggaggtgaatcatctgag
gaacgtaaagtggcttttacagtggtcttcatcacagtgttggatgtaaatgacaacact
ccgtactttatgtttcctgttgttaactgttctgtgctggagaacctcccggcatttacc
cacacctgttctgtccatgctgttgacaatgacttaggcccctacggccagctcacctac
tctattgtgtcctcctgcttcatggactatggcagtggcagccctgagaagaaggaagcc
tttgtcattgaccctctaacaggcgacattcacaccagacagacctttgactacgaacgt
gagagcgagtactgctttgtcgtggaagccagggacaaaggcgacaaagcagctacagtg
agagtgcaggtgaccatcaagggagtggatgagttcagtcctgtcttcacccaaaagcag
taccatttcctgctgccacaaaacgccaagcctggagagacagtcggatacgtgatggcg
atggaccatgatggaggggtggacggagtggtggagtactcccttgtgaagtcatcgccg
tttttctcaataaacaaaacaattggttccatttttgtgtcaggacctgtatatcgcaga
agaggcagccatgccagtgaggacatggtggagctagtagtgtccgcaggtagtcccaga
gtggcatccaggaccaccgcttgcctagtttacgtcaacatctctagctcagcagaagcg
ctcactggggtgcctcttgatgcacacatgctcagtttgagtgtctcactaattatgttc
ctttttgtcctcctcatttttgtgggcttggttctcagatacaagatcaaggaggcggca
atcaaaaaggccgctgccattgctgcgaacttaaaccacggcacaggctcgtttggtaga
tccaatagccaaagatccatttctctgcaggagattaaacggccaagcatcttggtgacc
aagagggacgtatcgcacccatacaatcacaatccttcagactcaagcggccgtggatca
gcagaaggtgaaacagctgaggaccaggaaatcaagtggataaatcagcacccctgccgt
aaaagggacgaatctgtgccaggcaaccaggccgcagagatcccggactctgctctgcct
ggagacaatatctcctgccactctgttgatgtagggccgcagcatattttatccatcaat
aaacgtttagtgtcagggatggccagcactgaaagcctccaccactttaaagaggaggga
ggaggtgagggactacttcctgcaatacttagggtgagagatttggaggagagcatgagg
acaaatgggtatgctcccctctcggaagcccaggcctctgcagattccctctcttcactg
gtgtgtctggaggagcagctgcagggcagctacagctgggactacattttggactgggag
ccacgctaccagactctggcctccgtcttcaccgatatcgggatgctccctgacgaggag
cttcaaggcggccgtgaggacttagcagcagaggcaagctgtctcatgcacccaccacct
ctaataacgggggtagctcagcccggcattaggactgtacctccacgaaagccagggcgg
gtcccaagcctaagaaggaagccctctttccccaaatatgcatattcccccttagccagg
aacacaggacttaccccttcagccatgacacccaatttctccccatccctttcttctctc
accattaggacccccagtgcctcaccagttgtctcggagacaggggtggggggaatcaaa
cttgactcagggcctctaactgcaagcctattggaggctgaaatccaggtgtag
DBGET
integrated database retrieval system
