Epinephelus lanceolatus (giant grouper): 117255938
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Entry
117255938 CDS
T07331
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117255938 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ely04131
]
117255938 (tgfbrap1)
Membrane trafficking [BR:
ely04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117255938 (tgfbrap1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
Prok-RING_1
TPR-S
Motif
Other DBs
NCBI-GeneID:
117255938
NCBI-ProteinID:
XP_033481091
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Position
1:41464232..41485224
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AA seq
875 aa
AA seq
DB search
MSVKAFELVPAVERDLLMGDKARINIECIECCGKHLYMGTNDCFIHHFLLDEVTSSKGKL
SYLAQKLLHKYLGLKKPVAELRAASALERLIVLCDGIVFLVDMVTLETVPSAAGGGAKIR
GVTAFCINENPVNGDPFCVEMGVLSSKRRTVQIYMVYEDRVQLVKEVTTPEQPCAVSVDG
YFLCLALATQYMILNYNTGASQDLFPYNSEERRPIVKRIGREEFLLAAPGGLGMFANAEG
VSQRAPVNWSESVIGAAVCFPYVVALDESFITIHSMLDQQLKQTLSFRDGHILQDFEGKV
ILASTKAVYVLVPLPLERQIQDLLASHRVEEALVLTEGAQQNIPKDKFQILHKRILQQAG
FIQFGQLQFLEAKEHFRKGQLDVRELISLYPLLLPASSTFTRCHPPLHEFADLNHLAQGD
QEKVLRCKKFLISYLGEVRSTEVANGCREDVDTALLKLYAEQDHDSLLDLLASDNSCLLA
DSVPWLEKYHKYFALGLLYHYNGQDAAALQLWIRVVDGDLQDSTRSDLYEYIIDFLCTCS
NLDLIWKYADWALRKDPTKGVHIFTKRPSSKDLPEVKHDDVITYLGKHSQALLLYLEHLV
LERRIKKEKFHTHLAVLYLERVLSLLSESPSDEEQLTRARERLQALLRESNLYRAQYLLA
KMENCEQLLLERATLHGKLEEHDKALHILVHELRDFPSAEAFCIWASSCRDSAYRQQLFH
QLLGVYLDGSLPGNTQTAAGGGDLEMAAVDLLNRHGEMFDAVHVLRMLPDGWSLQLLRPF
LGRAVRASMHACRTSQIALGLAHSENLQLLHDRLKHRKKPIFVSEKKGCHLCHNTFSEPD
VVCLPGGVPVHTHCVAQRVRDSPTKRQLTNSSNHT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaggcttttgagcttgtccccgctgtggagcgagatctcctcatgggcgac
aaggctcgcattaacatcgagtgcatcgaatgctgtggaaagcacttgtacatgggcacc
aatgactgcttcatccaccacttcctgctggatgaggtcacttcctccaaagggaaactg
agttacctggctcagaagctgctgcacaaatatctgggcctcaagaagccggtcgctgag
ctgcgtgccgcctcagcattggagcgtctgatagtgctttgcgatggaatagtgttcctg
gtcgacatggtgacactggagactgtcccctcggcagcaggtggtggagccaagatcaga
ggcgtgacagcattctgcatcaacgagaacccagtgaacggtgatccgttctgtgtggaa
atgggcgtgctctcctccaagcggcggacagtgcagatttacatggtgtatgaggacaga
gtgcagctggtcaaagaggtgaccactcctgagcagccctgcgctgtcagcgttgatggt
tacttcttgtgcctggccctcgctacacagtatatgattctgaactacaacacaggagcc
tcccaagacctcttcccttacaacagtgaagagaggagacccattgtgaagaggatcggc
agggaggagttcctcctagcagcacctggcggtctgggaatgtttgccaatgcagaaggg
gtatctcagcgggctccagttaactggtcagagagcgtgatcggtgccgctgtgtgtttt
ccgtacgtggtggcgttggatgaaagcttcatcaccatccacagcatgttggaccaacag
ctgaaacaaacactttcattcagggatggacacattctgcaagactttgaaggaaaggtc
atactggcttctactaaggcagtgtatgtcctggtacccctgccgctggagagacagatc
caggacttactggccagtcacagagtggaggaggcgcttgtcctcacagagggagcacag
caaaatattcccaaagacaagtttcagattttgcacaaaagaatcctccagcaggcgggc
ttcatacagttcggacaactccagtttctagaagcaaaagaacacttcagaaagggtcag
ctggatgtgcgggagcttatatctctttacccactgctgctgccagcttcctctacattc
acacgctgccaccctcctcttcacgagtttgcagatctcaaccacctggcacagggcgac
caggaaaaagtgctgcgatgcaagaaatttcttatcagttatttgggagaggtacgaagc
acagaggtggccaacggctgcagagaggacgtcgacactgcactgttaaagctgtatgct
gaacaggatcatgacagcctcctagacctgctagcttcagacaactcctgcctgctagca
gacagtgtcccatggctggagaaatatcacaaatattttgcactcgggctgctctatcat
tataatggtcaggatgcagcagcacttcagttgtggattcgtgtggtagacggggatctg
caggactccacgagatctgacctgtatgaatacatcattgactttctctgcacctgctcc
aacctggatctcatatggaagtatgcagactgggccttgcggaaggatcccaccaaaggt
gtccacatctttactaagagaccttccagtaaagatctgccagaagtgaaacacgatgat
gttatcacgtacctgggaaagcacagccaggcgctgctcctctacctggaacacctggtg
ctggagagaaggataaagaaagagaagttccacacacacctggccgtgttgtacctggag
agagtcttgtcactgctgtcggagtcgccatcagatgaggagcagctcaccagagctaga
gagaggctccaagctctgctcagggagtccaacctataccgtgcacagtatcttttagct
aagatggagaactgtgaacagctgctgctagagcgtgcgacactacatggaaagctggag
gagcatgacaaagcactgcatatattggtgcacgagctgagagacttcccatccgctgag
gccttctgtatatgggcctcttcttgtcgggattctgcttaccggcagcagctttttcac
cagctcttgggggtgtatctagacgggagccttcctggaaacactcagactgcagcagga
ggtggagacctggagatggcggcagtggacctcctaaatcgtcacggcgagatgtttgat
gcagtccatgtcctgcgcatgctccctgacggctggtcgctgcagctgctgcggcccttt
ttgggtcgagccgtcagggccagtatgcatgcctgccggacctcccagatcgctctgggg
ctagcccactctgaaaaccttcaactgctgcatgacaggttgaaacaccggaagaaacca
atctttgtgtctgaaaagaaaggatgccacctgtgccacaacaccttcagcgagcctgat
gtggtgtgcctgccgggtggagtgcctgtccatactcactgtgtcgcccagagagtaaga
gactctcccacaaagagacagttaactaatagcagtaaccatacgtga
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