KEGG   Epinephelus lanceolatus (giant grouper): 117255966
Entry
117255966         CDS       T07331                                 
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
ely  Epinephelus lanceolatus (giant grouper)
Pathway
ely03030  DNA replication
ely03410  Base excision repair
ely03420  Nucleotide excision repair
ely03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ely00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117255966 (rfc1)
   03410 Base excision repair
    117255966 (rfc1)
   03420 Nucleotide excision repair
    117255966 (rfc1)
   03430 Mismatch repair
    117255966 (rfc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ely03032]
    117255966 (rfc1)
   03400 DNA repair and recombination proteins [BR:ely03400]
    117255966 (rfc1)
DNA replication proteins [BR:ely03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    117255966 (rfc1)
DNA repair and recombination proteins [BR:ely03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     117255966 (rfc1)
SSDB
Motif
Pfam: RFC1 BRCT AAA AAA_22 PTCB-BRCT AAA_30 AAA_5 RuvB_N Rad17 AAA_14 AAA_17 AAA_7 BRCT_2 AAA_33 RNA_helicase AAA_18 AAA_16 nSTAND3 NTPase_1 NPHP3_N AAA_19
Other DBs
NCBI-GeneID: 117255966
NCBI-ProteinID: XP_033481126
LinkDB
Position
6:complement(43628630..43640182)
AA seq 1189 aa
MDIRRFFAPAAAKPAVQKPASNGNIKTEEKKKNHPSSDEEVKKNKKETAKVKSSKAEEKR
KDSEKKRKKRAVIESDSEDEEPRSKSKKSPKEKQKTSKMEPPPKKDPVQYVSETDSDSDN
FQSLKKAAKPKQNGTDKQTKSDGGSARPRAKEGLKSPFKPSSTQGKTAVKSPPVPVTPKS
APPPQPKKTPTSVFDYFGSATVQRSDKKLVASTKRKAPTQDTDDQISEEIARQLQMEEDM
ELEKQIHEDEEFARTLAMLDEEPQAKKARKGSNEKPAATTFPKKSSTVSASTSSPSKTSQ
RGSKSEDVISPSPRKIPAPVKASSKLAMMKKKEEETDEEPKSRTPISPTKKKISPKKEPI
ASSSSDKKFTPKVGITPITVKTSPKKPESTSTSPDNAEKRKINASAFRNFLNRDGPRALG
SKEIPQGEENCLEGCVFVLTGVLESMERDDAKSLIERYGGKVTGNISKKTTYLVQGRDSG
VSKLEKAESLGTKILDEDGLLELIRTKPGKKSKYEIAAEAESKTSKTRTPPSKASKSTPQ
SQKISPSKGNSRSPHTPSPSKTGLGQGHSARNRDGRTPPGRGSGHTARRELGLSSSASSS
LAPGTSSSPSPTGEDASLLWVDKYRPRSLKTVIGQQGDQSCANKLLRWLQNWHKHHSGGS
SKPPVARFGKFGGKDDGSGYKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKN
SLKEVVAESLNNTSIENFYKGTSQKVTSKHVLIMDEIDGMAGNEDRGGIQEMISLIKNSK
IPIICMCNDRNHMKIRSLANYCFDLRFQRPRVEQIKGAMMSLAFKEGIKIPPPALNEIIL
ASNQDVRQVIHNLSMWSAKDKVMTYDQCKSDAASARKDMKMGPFDVCRKVFAAGEETAHM
SLIDKSDLFFHDYSLAPLFVQENYLHVRPKAAGGDLKSHLMLLSKTADSICDGDLVDRRI
RSGQNWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKNSSTNKHSRIVQELASHMGL
KTMSSRQAVNLDYLHYLRQALLSPLQRHGAEGAGEAVQLLDNYQLIKEDVDSIMEISVWG
GQPDPYSKLDGKVKAAFTRAYNKEVHLTPYSLQAVKKGRRGGGGGGEGELGLEGEDINNE
EQESEDEGLKTDAMIKQKKAKATKESKKKEKEDSWKDKGKGKGKGKAKK
NT seq 3570 nt   +upstreamnt  +downstreamnt
atggacatcaggcggttctttgcaccggctgcagccaagcccgcggtgcagaaaccagct
tcaaatggaaacatcaaaacagaagagaagaagaagaatcatccctcttcagacgaggaa
gtgaaaaagaacaagaaggagaccgccaaggtgaaaagctccaaagcagaggagaagcgc
aaggacagtgagaagaaacgtaagaagcgtgcagtcatagagtcagactctgaggatgag
gagccaaggagcaaatcaaagaaatcccccaaggagaaacagaagacaagcaaaatggag
ccacctcccaaaaaagaccctgtgcagtatgtctctgaaacagactcagacagcgacaac
tttcagtccctaaagaaggccgccaaacctaagcagaatggcacggacaaacagacaaag
tctgatggtgggagtgctcgtccaagagccaaagaggggctgaagtctcctttcaagccc
tcctccacacaggggaaaactgcggtgaagtctcctcctgttcccgtcacccctaagtca
gccccgcctcctcagcccaaaaaaacccccacctcagtattcgactacttcggcagtgca
actgttcagcgttcagataagaagctcgtagccagcaccaaacggaaggctccgactcaa
gacacagatgatcagatcagcgaagaaatcgccagacagctgcagatggaggaggacatg
gagctggaaaagcagatccatgaggacgaggagtttgctagaactctggccatgctggac
gaagagcctcaagcgaagaaggctcgaaaaggctctaatgaaaaaccagccgctaccaca
tttcccaaaaagagtagtacagtctctgccagcacgagcagcccgtcaaagaccagccag
aggggcagcaagtcggaggatgtgattagtccatctccaaggaagatccccgcccctgtc
aaagccagctccaaactggccatgatgaagaaaaaagaagaagagacagatgaagagcca
aagagcagaacaccaatttcgccaacaaaaaaaaaaatctctcccaaaaaggagccgatt
gcttcgtcaagctcagacaagaagttcactcccaaagtaggaatcacacccatcacagtt
aaaacttctcccaagaaaccagagagcacaagtacgagccctgacaacgcagagaagagg
aagatcaacgcttcagcttttaggaacttcctcaacagagatggaccacgagctctgggc
tccaaggaaatcccacagggtgaagagaactgtttggagggctgtgtgtttgtgctgacg
ggggtcttggagtccatggagagggacgatgccaaatcccttatcgagcgctacggaggc
aaagtgacgggcaacatcagcaagaagaccacatacctggtgcagggcagagacagcgga
gtctcgaagctcgagaaggcggagagtctcggtaccaagatcctggatgaggatggtctg
ttggagctgatcagaacaaaaccaggaaagaagtccaagtatgagattgctgcggaggca
gagagcaaaacctcaaagaccaggactcctcccagcaaggcatcaaagagcaccccccag
tcccagaagatctctccctccaagggtaattccaggtctccacacaccccgagcccgtca
aagactggcctgggacaaggccacagtgcccggaacagagatggccgcaccccacctggg
agaggctcaggtcacacagcccggagggagcttggcctttcctcctcagcttcttcatca
ttagccccaggaacatcatcatccccatcaccaacaggagaggacgccagtctgctgtgg
gtggacaagtaccgcccccgctctctgaagactgtgattggccagcagggagaccagagc
tgtgccaataagctgctccgctggctgcagaactggcacaaacaccacagtgggggctct
tccaagccaccagtagcgaggtttggtaagttcggaggaaaagacgatgggtcaggatac
aaagctgctttgctctctggacctccgggtgtggggaagaccaccacagctgccctggtc
tgtgaggagctgggcttcagctatgtggagatgaacgccagctgcactcgcagcaaaaac
agtctgaaggaagtcgttgcagagtcacttaacaacactagcatcgagaacttctacaaa
ggcacgtctcagaaggtcaccagtaaacatgttctgatcatggatgagattgatggcatg
gctggcaacgaggaccgtggaggaatccaggaaatgatcagcttgatcaaaaattcaaag
attcccattatctgcatgtgcaacgatcgtaaccacatgaagatcaggtcactggccaac
tactgctttgatctgcgcttccagaggccgcgagtggaacagatcaagggagccatgatg
tccctcgctttcaaagagggaatcaagatcccacccccagctctcaacgaaataatccta
gcctccaatcaggatgtccgtcaggttatccacaacctgagcatgtggtcggccaaagac
aaagtgatgacgtacgaccagtgcaagtctgacgcagccagcgcccgcaaggacatgaaa
atggggccgtttgatgtttgcagaaaggtgtttgcggctggggaggagactgcccatatg
agcctcattgacaagtctgacctcttcttccatgactactcgttagcgccgctctttgtc
caagagaactacctgcatgttcggccaaaggctgccggtggtgacctgaagtcccacctc
atgctgctgagcaagacagctgactccatctgtgacggagatctggtggacagacggatc
cgctctgggcagaactggtcactgctgcctacccaggccatctatgccagcgtgttacca
ggcgagctcatgagaggctacatgagtcagttccccaccttccccagctggctcggcaag
aactcctccaccaataaacattcccgcatcgtccaggagctagcctcacacatgggttta
aagacaatgagcagcagacaggcagtgaacctggactacctgcactacctgcggcaggcg
ctgctgagcccacttcaaaggcacggagcagagggtgctggtgaagccgtgcagctgctg
gacaactaccagctcatcaaggaggacgtggacagcatcatggagatcagtgtttggggt
ggacagccagacccgtactccaaactggatggcaaggtgaaggcagcgtttacaagggcc
tacaacaaagaagttcacttgacgccgtactctctgcaagcagtgaagaagggccgccgt
ggtggtggtggtggcggcgagggagagttggggttggaaggagaggacataaacaacgaa
gagcaggagtctgaggatgagggtctcaaaacagacgccatgatcaaacagaagaaggcc
aaagccaccaaggagtcaaagaagaaggagaaggaggattcttggaaagacaaaggcaag
gggaaaggcaaaggcaaggccaagaaatga

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