Epinephelus lanceolatus (giant grouper): 117256737
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Entry
117256737 CDS
T07331
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely04510
Focal adhesion
ely04512
ECM-receptor interaction
ely04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117256737 (col2a1b)
04518 Integrin signaling
117256737 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117256737 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ely00536
]
117256737 (col2a1b)
Glycosaminoglycan binding proteins [BR:
ely00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117256737 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
117256737
NCBI-ProteinID:
XP_033482241
LinkDB
All DBs
Position
7:complement(20668650..20739934)
Genome browser
AA seq
1489 aa
AA seq
DB search
MLSFMDSRTVLLLVANQVCLLAVVRCQEDDQDEFSCIQDGQRYSDKDVWKPEPCRICVCD
TGTVLCDEIVCEELKDCPKPEIPFGECCPICAADQPPPIGVPGAKGQKGEPGDITDVVGP
RGPAGPMGPPGEQGPRGSRGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGGN
FAAQMASGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEAGEPGQSGP
MGPRGPPGPSGKPGDDGEAGKPGKSGERGPAGPQGARGFPGTPGLPGIKGHRGYPGLDGA
KGETGAVGAKGEAGAPGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPPGP
VGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIPGA
KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPGGV
QGPPGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGA
SGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGARGQ
PGVMGFPGPKGATGEPGKSGEKGLGGAPGLRGLPGKDGETGPAGPPGPAGPAGERGEQGQ
PGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGPQGLQGP
RGLPGTPGTDGPKGAIGPAGAGGAQGPPGLQGMPGERGAAGIPGPKGDRGDIGEKGPEGA
PGKDGGRGLTGPIGPPGPGGPNGEKGEAGPAGPSGAPGTRGAPGDRGETGPPGPAGFAGP
PGADGQPGLKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGATGF
PGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGTPGEKGD
AGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDRGP
PGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGATGIKGDRGNTGPAGAPGAPGAPGAGGP
VGPTGKQGDRGEAGAQGPSGPPGPAGARGMPGPQGPRGDKGEAGESGERGQKGHRGFTGL
QGLPGPPGQAGDQGATGPAGPAGQRGPPGPVGPAGKDGGNGLPGPIGPPGPRGRSGETGP
AGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDAEVDAT
LKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVFCNME
TGESCVKPKPASIPRKNWWSSKSKDRKHIWFGETMNGGFHFNYGDDSLAPNTAAIQMTFL
RLLSTEASQNLTYHCKNSVAYMDASAGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDGC
TKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgttgagctttatggattcccggactgtactgctacttgtagcaaaccaagtctgtcta
ttagccgttgtaagatgtcaagaggacgaccaggatgagtttagctgtatacaagatgga
cagcgctatagtgacaaggacgtatggaaaccagagccttgtcgcatctgtgtgtgtgac
actggaaccgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgccccaaacct
gaaatcccattcggagagtgttgccccatctgcgcagctgaccagcctccacccattgga
gttcctggagccaagggtcagaaaggtgaacccggagacattaccgatgttgtaggacca
agaggaccagctggcccaatgggcccaccaggagagcaaggaccccgcggatcaagagga
gacaagggagagaagggaagccctggtccccgcggcagagatggtgagcctggcaccccc
ggaaaccccggcccccctggacctccaggacctaatggaccccctggccttggtggaaac
tttgctgctcagatggctagtggcttcgacgagaaggctggcggcgcacagatgggtgtg
atgcaaggaccaatgggccctatgggtcctagaggaccacctggccccaccggatcacct
ggcccacaaggtttccaaggcaacccaggagaggctggagagcccggacaatctggcccc
atgggtccccgtggcccccctggaccttctggaaaacctggcgatgatggtgaggctggc
aaacctggcaaatcaggcgaacgtggacctgctggacctcagggagctcgtggattccca
ggaactcctggcctgcctggcatcaagggacacagaggctatccaggtcttgatggtgca
aagggagagactggagctgttggggctaagggtgaggctggtgctcctggtgagaatggc
gctcctggaccaatgggacctcgcggtttgcctggtgagagaggccgtcctggacccagt
ggagttgctggtgcacgtggaaatgatggcttgcccggtcctgctggtccccctggccct
gtcggtccctctggagctccaggcttccctggctctcctggctcaaagggagaagccggt
cctactggtgctcgtggacctgagggtgctcagggaccccgtggagagtctggcacccct
ggatcatccggaccttctggtgcttctggaaaccctggtactgatggtatccccggagcc
aaaggatcagctggtgctcctggtattgctggtgctcctggtttccctggacctcgtggg
cctcctgggcctcagggagcgactggacctctagggcccaaaggaacatccggagaccca
ggtatcccagggttcaagggcgaggctggacccaaaggagaaattggaccaggtggtgtt
cagggacctcctggcccacaaggagaagagggcaagagaggacccaggggtgagcctggt
gctgctggaccacttggacctcctggagagagaggagcccccggtaaccgtggtttccct
ggtcaagacggtctggctggtcccaagggagcccctggtgagcgtggaccctctggtgcc
agtggtcctaagggtgctaacggtgaccctggccgccctggagagtctggtctgcccggt
gccagaggcctgactggacgccctggtgacgctggtcctcaaggcaaagttggaccttct
ggagctgctggtgaggacggtcgcccaggaccccccggcccacagggagcccgtggacag
cctggtgtgatgggattccccggacccaagggagcaactggtgagcctggcaagtctgga
gagaaaggactgggtggagctcctggtctgagaggtctgcctggcaaagatggagaaacc
ggccctgctggaccccccggccccgccggccctgctggagagagaggagagcaaggacag
cccggtccctcaggtttccagggtctgcctggacctcctggcccccctggtgagggaggc
aaacctggagaccagggtgttcctggagagggtggagctgctggtgctactggacccaga
ggagaacgtggtttccctggagagagaggagctgccggcccccagggtttgcagggacct
cgtggtctgccaggaactcctggaactgacggacccaagggagccatcggacctgctggt
gctggtggagctcagggaccccccggcctgcagggtatgcctggagagagaggagctgcc
ggcattcctggacccaaaggagacagaggtgacattggagagaaaggacccgaaggtgct
cccggcaaagacggtggtagaggtctcactggtcccattggtcctcctggtcctggtggt
cccaatggtgagaagggtgaagctggtcctgctggtccctctggagctcctggtacccgc
ggtgctcctggtgacaggggtgagactggacctcctgggcctgctggatttgctggacct
cctggtgctgacggtcagccaggactcaagggagagcagggagaatctggacagaagggt
gacgctggtgcccctggaccccaaggaccctctggtgcccccggacctgcaggtcctacc
ggtgtttctggacccaaaggtgctcgtggtgctcagggacctcctggtgccactggtttc
cctggagctgctggccgagttggaccccctggtcccaatggtaatcctggacctgctggt
cctgctggcccccctggtaaagatggacccaagggtgtgaggggtgatggtggaccccca
ggcagacagggtgacgctgggctccgtggccctgctgggactcctggagagaagggagat
gctggagaggatggtccccctggtcccctgggtccttcaggtcctcagggtctggctggt
cagcgtggtatcgtcggtctgcccggacagcgtggtgagagaggtttccctggtcttccc
ggaccttctggtgagcccggaaagcagggagctcctggtggcagcggagaccgtggaccc
cctggacctgttggaccacctggactcactggacctgcaggagagcctggcagagagggc
aaccctggatctgatggccctcctggtagagatggtgcaactggaatcaagggtgatcgt
ggtaacaccggtcctgctggtgctcctggtgctccaggcgctcctggtgctggcggccca
gtcggtcccaccggcaaacagggcgacagaggagaggctggtgcacaaggaccctctgga
cctccaggacctgctggagccagaggaatgcctggacctcaaggaccccgcggtgacaag
ggtgaggctggagagtccggtgagcgaggacagaagggacacagaggcttcactggtctg
cagggtctgcccggacctccgggtcaagctggagaccagggtgctactggacctgctgga
cctgctggacaaagaggaccacccggccctgttggccctgctggaaaggatggtggaaat
ggtctgccaggacccatcggaccccctggacctcgtggtcgcagtggagagaccggtccc
gctggtccccccggaaaccctggaccccccggtcctcctggcccccccggccctggcatt
gacatgtccgccttcgctggactgggtcagactgagaagtcccccgatcctctcaggtac
atgagggccgaccaggcttccggaaacctccgtcagcacgacgccgaggtcgacgccacg
ctcaaatctctcaacaaccagattgagaacatccgcagccccgagggatccaagaagaac
ccggctcgcacctgcagagacctgaagctgtgccatcctgactggaagagcggagagtac
tggattgatcctaatcagggctgcaccatcgatgcaatcaaggttttctgcaacatggag
acaggagagtcctgcgtcaaacctaagcctgcaagcatccctcgcaagaactggtggtcc
agcaagagcaaggaccgcaaacacatctggttcggagagacaatgaatggaggattccac
ttcaactatggtgacgacagcctggcacccaacaccgctgccattcagatgactttcctg
agactattgtccaccgaggcttctcagaacctcacctaccactgtaagaacagcgtggcc
tacatggacgcctcagcgggcaacctgaagaaggccgtgctgctgcagggctccaacgac
gtggagatcagagccgagggcaacagccgcttcacttacagcgtgatggaggacggctgc
acgaaacacacgggacagtggggcaagacagtgattgaatacagatcgcagaagacctct
cgtctgcccattgtagacattgcccccatggatattggtggagcagaccaggagttcgga
gtggaagtcggggcggtctgcttcttgtaa
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integrated database retrieval system
