Epinephelus lanceolatus (giant grouper): 117258394
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Entry
117258394 CDS
T07331
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
ely
Epinephelus lanceolatus (giant grouper)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_2
FN3_Tor_3rd
DUF4959
SPOR
Motif
Other DBs
NCBI-GeneID:
117258394
NCBI-ProteinID:
XP_033485150
LinkDB
All DBs
Position
8:39893881..39944674
Genome browser
AA seq
1584 aa
AA seq
DB search
MSPHLLASSSSSSFWLMLCFLLSVVLLLSSGVHGQGRLKLTVLSEDRLQMKWKEADGPVQ
GYKVRVRPISEVPQPELMLTTTRGRATVAGLDSSQEYALQVLVLNGTTEKLLAKRRFTME
GLREEEMIRSGSREQRKKLLPGGSGSGDLDDVTEALLGLPTILYPDPTTTAAAATAEPTA
IETPSQLPDEAPEKTSKEKRKRKKEKERDRSRVENKEEQGTTQGKAAEEKPRKIPFPTQP
VTGMSPRKPFECDTDAAADIMLLVDGSWSIGRTNFRRVRDFLEGLMTPFHIGPNYIQIGL
TQYSGDPRTEWQLNNFTTKDQLLEAVRNFRYKGGNTFTGQALLHVMEENMRAEAGARSGT
PFFLVLLTDGKSQDDAIAAANRLKNAGVEIIAVGVKNADEAELRQVASEPVDLNVYNVND
FPLLSKLVARLVHILCGRIEDRGISKRMEPGPTADPALSYPSPTDLRFSELGSREVKLHW
TSPAKPVQQYRVVYHSAEGQSPQEVVLAGSESTVLLEGLSSQTLYHVSIFPVYENNVGLA
LRGTVTTLPLAMPANLEVTPSSYSMLRVSWGAAPGATQYMILYSALNHGEPDDAKEEKFS
ADQTVVELAGLLPATDYSVTLYALYDEDPSDPVTAVATTFPLPPPVSVQFPMVTHSMLKV
SWAPGAVDVPGHRITYSTNHGSDVKQVEVTGLNSVLVQNLSSLSRYLVSVQSHYPQGLSA
ALTSNVTTLKVPAPTDLRVTNFSGSDITVRWEAAADDVVSYLIKWISLSGGDLRQLRVSG
ESEGAILEGVEDEKEYQISLSALYGDGAQSEAVAIRYSTLSGGGPSSISVSEETAVSMVV
SWVPPNAHVLQYRVTYTALTAAETQDSTVLVQGGEKLVVLESLQPDTRYSILVTAEYRNR
EGGSGSAQGKTTSLRVSSVSVVRSDHSSICVSWRPVSAVDGYRIVIQSVKDKQTKEQTVD
ESSSSHCFTDLEPETLYRISVHSLLGSAEGTAVSILHPTATAPARIPIHPRMYPIHNEVC
PEVTIRNNIVKGFDMMEAFGLTQRAHSSVEGVAAEPFVFNTLPTYTLYRDVQLTQSTKFI
HPAGFSPEHTISIAFRVLQETPREPFALWQLTDNDFQPKMGVVLDPTTKHLVYFSLDYRG
EVQELTFDQSQVHRLFYGSFHKIHLSVSQVSVSLSVDCQRVGERPARPLGNLPTDGFEML
GKLVKTRGPNSGSVPFQLQSFEIVCNTTWALDDTCCDLPGVRDDEGCPAPAYTCTCSSDI
PGAPGSPGPSGKPGPRGEKGDKGEQGQKGEVGPPGKAGFEGGLGPLGSIGPRGMSVQGKV
GPPGARGEKGDAGRPGVQGLPGPPGPKGEEGIPGPKGIRGPEGNIGGPGITGPRGFQGMP
GHPGPPGERGFTGPVGPTGLSGGKGERGEKGEPQSMAMIYQLVTQACEQLVHKEVLKLDM
FINEISRKPAPVEEPVGPPGEPGIPGPKGPPGARGAQGHVGPRGRPGKAGYPGEQGRRGM
PGGKGDAGTNVQGPTGVKGFAGPPGESKLGIPGSKGEDGKPGSSGITGPPGQPGEIGPPG
VCDSSGGCHRVPQQTEDPYYGYQP
NT seq
4755 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgcacctccttgcttcatcgtcatcatcatctttctggctaatgctgtgtttc
ctgctcagtgtcgtcttgctgctgtcttcaggggtccatggccaaggtcgtctaaagctg
acggtcctgtctgaggacagactgcagatgaagtggaaggaggctgatggacccgttcag
ggctacaaggtccgggtgagacccatctcagaggtgccacagccagagctgatgctgacc
accacacggggccgggcaacagtggcgggactggactccagtcaggaatacgccctccaa
gtccttgtgctcaatggaacgacagagaaacttcttgcaaaacgacgattcaccatggag
ggtctgcgggaggaggaaatgatccgcagtggcagtcgagagcagaggaagaagttgctg
ccaggcgggtcggggtcaggagacctagacgatgtaacggaggctctgttgggcctgcca
acaattctgtatccagaccccaccaccactgctgctgcagctactgcagagcccacagca
atagaaaccccgtctcagctccctgacgaggccccagagaaaaccagcaaagagaagagg
aagaggaagaaagaaaaagagcgggatcgttctagggtggagaataaagaggagcagggg
acaacacagggcaaagcagccgaggagaaacctcgaaagatacccttccctacccagccg
gttacaggaatgtctccaaggaaaccgtttgagtgtgacactgatgcagccgcggacatc
atgttgttggtggacggctcctggagcattggacgcactaacttcagacgggtcagggac
ttcttggagggcttgatgacacccttccacatcgggccgaactacattcagatcggtctg
acccaatacagcggagacccccgcactgaatggcagctcaacaacttcactactaaagac
cagctgttggaggcagtaaggaattttagatataagggaggaaacacatttacaggccag
gcgctgctccatgtcatggaggagaacatgagggctgaggcaggcgcgaggtcaggcaca
ccgttcttcttggtcttgttgactgatgggaaatctcaggatgatgccattgctgcagcg
aaccggctgaagaatgctggtgtggagatcatcgctgtaggtgtaaagaatgctgatgag
gcggagttgagacaagtggcatcggagccagtggatctgaacgtctacaatgtcaatgac
tttcctctgctcagcaaactggtggcgcgactggtccacatcctgtgtgggaggatagag
gaccgtggcatctcaaaacgaatggagcctggacccacagcagacccagccctctcctac
cccagtccgactgatctccgtttctctgaattgggctccagagaagtgaagcttcattgg
accagtcctgctaagccagtccaacagtacagagtggtctaccatagtgccgagggtcag
agtccacaggaggtggtgttggctggctcagagtccactgtgctgctggaaggcctctcc
tctcagaccctgtaccatgtgtcaatctttcctgtgtatgaaaacaatgttggcctggca
ctcagaggaactgtcactacattgccactggccatgcctgccaacctggaggtgactcct
tcctcttacagcatgctgcgagtgagttggggtgcagcgcccggtgcaacacagtacatg
atcctgtattcagcactcaaccacggagagcccgacgatgccaaggaggagaaattcagt
gcagaccagacagtggtggagctggcagggttactgccggcaacagactactctgtcact
ctttatgctctgtatgatgaggatcccagcgaccctgtcactgctgttgccaccacattc
cctctcccaccaccagtgagtgttcagttcccaatggtcacccacagtatgctaaaggtg
agctgggctcctggagctgtggacgtccctggccacagaatcacctacagcaccaaccac
ggcagtgacgtcaagcaggtggaggtaacaggactgaactcagtgctggtgcagaacctt
tcctctctgtctagatacctggtttcagtccagtctcactacccacaaggcctttctgca
gcactcaccagcaacgtcaccacactgaaggtgcctgccccaacagacctcagggtgact
aatttctcaggcagtgatatcactgtccgctgggaggctgcagccgatgatgttgtctct
tatctcatcaagtggatttccctcagcgggggagacctgagacagctgagggtgagtggt
gagagtgagggggcaatcctggagggggtggaggacgaaaaggagtaccagatctctctg
tctgcactttatggagatggagctcagagtgaagctgtggccatacgctacagcaccttg
tctggtggaggcccatccagcatatcggtctcagaggagacagcggtcagcatggtagtc
agctgggtacctcccaatgctcacgttcttcagtatcgtgtgacatacactgccctgact
gcagctgaaacccaggacagcactgtgttggtccaaggtggtgaaaagctggtggtgctg
gagtcgttacagcctgatacacgttacagcatcctggtcactgctgagtaccgcaacaga
gaaggaggcagcggttcagctcagggcaaaaccaccagtctgagggttagcagtgtgagt
gtggtcaggtcagaccactccagtatctgtgtgtcttggagacctgtgtctgctgtcgat
ggatatcgtattgtcatacagtctgttaaagacaagcaaacaaaggaacaaactgtcgat
gagtccagcagcagccactgtttcactgatctggaaccagagactctgtatcgcatcagc
gtgcactcacttctgggctcagcagagggcactgccgtctccattctccatccaacagcc
acagctcctgccagaattcccatccatcccagaatgtaccccatccacaatgaagtctgc
cctgaagtcaccatcagaaacaacattgttaaaggatttgacatgatggaagcatttggt
ctgactcagagagctcactcgtctgtggagggcgtggcagccgagccttttgtcttcaac
acgctccccacctacactctgtatagagacgtccagctgacacagagcactaagtttatc
caccctgcaggtttctctccagaacacaccatcagcattgcatttcgcgtcttgcaggaa
acacccagggagcctttcgctctctggcagctcactgacaacgacttccagcccaagatg
ggagtggtgcttgaccctactaccaagcatctggtgtatttcagtctggactacagggga
gaagtgcaggaactgacctttgaccagtcgcaggtccaccgactgttctatggcagtttt
cacaagattcacctgtctgtcagccaggtgagtgtgtccctatctgtggactgccagcgc
gttggtgagaggcctgcccgccctctaggcaacctaccgactgatggttttgagatgctg
ggaaaactggtgaagaccagaggacccaatagtggatctgtgccgttccagctgcagtcc
tttgagatcgtctgtaacaccacatgggctttagacgatacctgctgtgacctgcctgga
gtgagagatgatgagggatgtcctgccccggcgtacacctgtacctgttcctctgacatc
cccggagctccgggttcccctggaccatctggaaagccaggtcctcgtggtgagaaaggt
gataagggagaacaaggccaaaagggggaggtaggacctccaggaaaagctggatttgag
ggaggtcttggaccccttggcagcataggaccccgaggcatgtccgtgcagggtaaagtg
ggtccgcctggtgcaagaggggaaaaaggagatgctgggcgaccaggagtccagggttta
ccaggacctccgggtccaaaaggtgaagaggggattccaggccccaagggcattagggga
cctgaaggtaacattggtggacctggcataactggacccaggggtttccaaggaatgcca
ggacacccaggacctccaggggaaaggggcttcacaggacctgtgggacctacgggtctg
tcggggggtaaaggagagcgaggagagaagggggagcctcagtctatggctatgatctac
caactggtcacacaggcctgtgagcaactcgtgcataaggaggtgttgaagcttgacatg
ttcattaacgagataagtcgtaagccagctcctgttgaggagccagtggggcccccaggg
gaacctggtataccaggacccaagggccctccaggtgccaggggcgcacaggggcatgtt
ggcccgagggggagacctggcaaggctggatatccaggagaacagggaaggagagggatg
ccaggggggaaaggtgatgcagggaccaatgtccaggggcccacaggtgtcaaaggattt
gcaggtcctccaggtgagtccaagctgggaatcccaggttccaaaggagaagatggtaag
ccaggctcttcagggatcaccggacctcctggacagccgggcgagattggaccaccgggt
gtgtgtgacagcagtggaggctgccacagagttccccagcaaacagaagacccttattat
ggctaccagccttag
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