Epinephelus lanceolatus (giant grouper): 117258415
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Entry
117258415 CDS
T07331
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely04510
Focal adhesion
ely04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117258415 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117258415 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ely00536
]
117258415 (col2a1a)
Glycosaminoglycan binding proteins [BR:
ely00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117258415 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
SNARE
VWC2L_2nd
Amnionless
Motif
Other DBs
NCBI-GeneID:
117258415
NCBI-ProteinID:
XP_033485207
LinkDB
All DBs
Position
8:complement(14424461..14453940)
Genome browser
AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGGCIQDGQQYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPLIPSGECCPICPADASAPIETIGGKGQKGEPGDIADVVG
PQGPPGPMGPPGEQGSRGEAGPKGDKGNPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG
NFAAQMARGFDDKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGEAGEPGPAG
SMGPRGPPGPSGKPGSDGESGKPGKPGDRGPAGPQGARGFPGTPGLPGIKGHRGHPGLDG
AKGETGAAGAKGEGGAAGENGAPGPMGPRGLPGERGRSGAAGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGSPGAKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPG
AKGSAGAAGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGDLGPAG
PQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGVAGAKGVPGERGSPG
AAGPKGASGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEPGKTGEKGLVGRPGLRGLPGKDGETGAAGPSGPAGPAGERGEQG
QPGPSGFQGLPGPSGAPGEPGKPGDQGVSGEAGAPGAVGPRGERGFPGERGGAGAQGLQG
PRGLPGTPGSDGPKGAIGPAGAPGSQGPPGLQGMPGERGTGGIPGPKGDRGDNGQKGPEG
APGKDGSRGLTGPIGPPGPAGPNGAKGETGPTGVSGAPGARGAPGDRGEGGPPGPAGFAG
PPGADGQPGAKGELGESGQKGEAGSPGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGATG
FPGAAGRVGPPGPNGNPGPAGPAGSAGKDGPKGARGDAGPPGRQGDTGLRGPAGAQGEKG
EPGEDGPPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGSAGDRG
PPGPVGPPGLSGPAGEPGREGTPGSDGPPGRDGATGVKGERGNTGPAGAPGAPGPPGSPG
PVGPLGKQGDRGESGAQGPAGPAGPAGARGMAGPQGPRGDKGESGETGERGQKGHRGFTG
LQGLPGPPGPAGDAGAAGPAGPSGAKGPGGPAGPAGKDGANGLPGPIGPPGPRGRSGETG
PAGPPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDS
TLKSLNSQIENLRSPDGSQKNPARTCRDLKLCHPEWKSGTYWVDPNIGSIADAIKVFCNM
ETGETCVTPSIAEVPKKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGPVANAGSVQLTF
LRLLSTEASQNLTYHCKNSVAYMDQATGNLKKALKLQGSNDVEIRAEGTSRFTYSVLEDG
CQKHTNRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatcccaagttgtttta
ctatccgtggtcagatgtcaggaagaggacgaccaggaggcaggtggctgcatccaggac
ggccagcagtataatgataaggatgtgtggaagcccgagccgtgtcgcatctgtgtgtgc
gacagcggagcggttctgtgtgatgagataatctgcgaggagatcaaagaatgcgccaac
cctctcatcccatctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt
gagactattggtggaaagggccagaaaggtgaaccaggagatattgcagatgttgtagga
ccacaaggaccaccaggccctatgggccccccaggtgaacagggatcacgcggagaagct
ggccccaagggtgataagggaaatccaggacctcgtggaagagacggtgagcccggcacc
cctggaaaccccggaccccccggcccacctggcccacctggcccacctggacttggaggg
aactttgctgctcagatggctagaggttttgatgacaaggctggaggtgctcagatgggt
gtgatgcagggaccaatgggtcctatgggtcctcgtggtccccctggacctagtggagct
cctgggccacagggtttccaaggagcccctggtgaggctggagagcctggtccagctgga
tcaatgggacctcgtggaccacccggaccctctggaaaacctggaagtgatggtgaatct
ggcaaacctggcaaacctggagaccgtggacctgcagggcctcagggagctcgtggattc
cctggaactcctggacttcctggaatcaaaggacacagaggtcatcctggtctggatgga
gctaagggagaaactggtgccgcaggagccaagggtgagggtggtgctgccggagagaat
ggagcccctggacccatgggcccacgtggtctgcctggtgagagaggacgttctggagct
gctggagccgcaggtgcccgcggaaatgatggcttgcctggtcctgctggtccacctggg
cctgttggtcctgcaggagctccgggtttcccaggatctccaggagccaagggagaagct
ggtcctactggagcccgtggagctgaaggagcacagggaccccgtggtgaggctggtacc
ccaggatctcctggacctgccggagcatcgggtaaccctggtactgatggtatccctgga
gctaaaggatcagctggtgctgctggtattgctggtgctcctggattccccggcccccgc
ggcccacctggaccacagggagctacaggacctctggggccaaagggacagtctggagac
cctggcctgcctgggttcaaaggtgaagctggacccaagggagaccttggccctgctggt
ccccaaggcgcccctggccctgccggcgaggaaggaaagagaggtgccagaggagagcct
ggagctgctggaccactcggacctccaggagagagaggagctcctggtaaccgtggtttc
ccaggtcaggatggtgttgctggtgctaagggtgttcctggtgaacgtggttctcctggt
gctgctgggcccaaaggtgcttctggagaccctggacgcacaggagagtcaggccttcct
ggagccagaggtctcactggtcgtcctggagacgctggtcctcaaggcaaagttggaccc
tctggtgcccctggtgaagatggtcgccccggtccacctggtcctcagggagcccgcgga
cagccaggagtgatgggattccctggaccaaagggagccaatggtgaacctggaaagaca
ggagagaagggtcttgtgggtcgtcctggtctgagaggtctgcctggaaaagatggtgag
actggtgctgctggaccttctggccccgctggacctgctggagagagaggagagcaagga
cagcctggaccctctggcttccagggtctgcctggaccatctggtgccccaggagagcct
ggaaaacctggagaccagggagtttctggagaggctggagctcctggtgctgttggaccc
agaggtgagcgtggtttccctggtgagagaggtggtgctggagctcagggtctgcaggga
cctcgtggacttcctggaacacctggaagtgatggacctaagggagctattggaccagct
ggcgctcctggatcccagggaccccccggcctgcagggtatgcctggagagagaggaacc
ggtggcatcccaggacccaagggagacagaggtgataacggacagaaaggacctgaggga
gctcctggaaaggacggtagcagaggtctgactggtcccattggtcctcctggcccagct
ggacctaacggcgccaagggagagactggacccactggtgtttctggtgctcctggcgct
cgtggtgctcctggtgaccgtggtgagggcggacctcctgggcctgctggatttgctgga
cctcctggtgcagatggtcagcctggtgctaagggagagcttggtgagagtggacagaag
ggagaagctggttctcctggacctcagggaccatctggagctcctggacctgtgggacct
actggtgtaactggacctaaaggagcacgtggtgctcagggagctcctggtgctactggt
ttccctggtgctgctggcagagttggacctcccggccccaatggtaaccctggccctgct
ggccctgctggttctgctggcaaagacggacctaaaggtgctcgtggtgatgccggcccc
cccggaagacagggagacactgggcttcgtggacctgctggtgcacagggagagaaggga
gagcctggagaggatggaccacctggtgctgatgggccttcaggtcctcagggtctggct
ggatctcgtggtattgttggtttgcctggtcagcgtggagagagaggtttccctggtctc
cctggaccttctggagaacctggtaaacagggagcttctggttctgctggtgaccgtgga
cctcctggacctgtgggaccccctggacttagtggacctgctggagagcctggaagagag
ggtacccctggatcagatggacctcctggaagagatggagctactggagtcaagggagag
cgaggtaacactggacctgctggcgcccctggagctcctggtccccctggttcccctgga
cctgtcggaccacttggcaagcagggagacagaggagagagtggtgctcaaggacctgca
ggacccgccggacctgctggcgctcgcggaatggctggaccccaaggaccacgtggagac
aaaggagaatctggtgagaccggagagaggggacagaagggtcaccgtggcttcactggt
ctgcagggtcttcctggacctcctggtcctgctggagatgctggagctgccggacctgct
ggaccaagcggagcaaagggaccaggtggacccgctggacctgctggcaaagacggagca
aacggactgcctggccccattggaccacctggacctcgtggacgcagcggagaaactggt
cctgctggtcctcctggtaacgccggaccccctggccctcctggtcctcctggccctggc
atcgacatgtctgccttcgccggtctgggtcagaccgagaagtccccagatcctctcagg
tacatgagggccgatgaggcctccagctccctgaggcagcacgacgtggaggtcgattcc
acactcaagtccctcaacagccagattgagaacctgcgcagccccgacggcagccagaag
aaccctgctcgcacctgcagagacctgaagctgtgtcaccctgagtggaagagtggtacc
tactgggtggatcccaacattggcagcatagccgatgccatcaaggtcttctgtaacatg
gagactggagagacctgcgtcaccccgagcatcgccgaagtaccaaagaagaactggtgg
actagcaagagcaaggaccgcaaacacgtctggttcggagagaccatgaatggaggattc
cacttcagctacgctgaggacggccctgtcgccaacgccggcagtgtccagctgaccttc
ttgaggcttctgtccactgaggcatcccagaacctcacttaccactgcaagaacagcgtc
gcctacatggaccaggccacaggcaacctgaagaaggctctgaagctgcagggctccaac
gatgtggagatccgcgcagagggcaccagccgcttcacatacagcgtgttggaggatggc
tgccagaaacatacaaaccgatggggcaagactgtctttgagtacaaaacacagaaaacc
tcccgcctgccaatcgtagacattgctcccatggacatcggaggagcggatcaggagttt
ggagtggaagtaggcgcagtctgcttcttgtaa
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integrated database retrieval system
