Epinephelus lanceolatus (giant grouper): 117259435
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Entry
117259435 CDS
T07331
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03022
Basal transcription factors
ely03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117259435 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
117259435 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ely03021
]
117259435 (ercc3)
03400 DNA repair and recombination proteins [BR:
ely03400
]
117259435 (ercc3)
Enzymes [BR:
ely01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
117259435 (ercc3)
Transcription machinery [BR:
ely03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
117259435 (ercc3)
DNA repair and recombination proteins [BR:
ely03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
117259435 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
AAA_34
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-GeneID:
117259435
NCBI-ProteinID:
XP_033486654
LinkDB
All DBs
Position
1:complement(36043344..36054598)
Genome browser
AA seq
782 aa
AA seq
DB search
MGKKDKVDRDKKSKKRFYEEEEDEDEAVGSESQEAVPAAAGKQVDESSTKLDEYGAKDYR
VQMLLKNDHTARPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPNHVHEYKLTAYS
LYAAVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFP
DVIQRLLQDNVIRECRLRTADGADTELITEVIHSKSAISKSVEDKGGTSTSQQAADGQTS
TQQVPEDIFSYYEQMDKDEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRND
TVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAERVMEWMRSQEWGLIILDEVHTIPARMFRRVLTIVQAHCKMGLTATLVREDDKIVDL
NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
FRACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEGDLMFSTKEDQQQLLQKVLAAS
DLDAEEEVVVEVGGQPKFSRRTGTMSSMSGADDTVYMEYQNRGSKSSALGKSVHPLFKRF
RK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaaaagataaagtagaccgggacaagaagtccaaaaagcgtttctatgaggag
gaagaagatgaggacgaagcagtgggcagcgagtcccaggaggccgtacctgctgctgca
gggaaacaagtggacgagtccagtacaaaactggatgaatatggagccaaagactaccgt
gttcagatgctgctgaagaatgatcacactgcacgccccctctgggtggctccagatgga
cacatcttcctggaggccttctcaccagtttacaagtacgctcaggatttcctggtggcc
attgcagagccggtgtgcaggcctaaccacgtccatgagtacaagttgacggcctattcc
ctgtatgcagctgtcagcgtggggctgcagacctcagatattgtggagtacctgcagaaa
ctcagcaaaacatctgtacctgatggaattgtgcagtttataaagctctgcacagtcagc
tacggcaaagtcaagctggttctgaagcacaataggtattttgttgagagtgcctttcct
gatgtgatccagcggcttctgcaggacaatgtgatccgtgaatgtcgtcttcgtaccgca
gacggagcagacactgagcttattactgaagtcatccacagcaagtcagcgatttccaag
tctgttgaggataaggggggcacgtccacctcacagcaggctgccgatggacaaacctca
acccagcaggtccctgaggacatcttcagctactatgagcagatggataaagacgaagaa
gaggaggaagagactcagactgtgtcctttgagattcgccaggagatgattgaagagctg
cagaagcgttgtattcagctggagtaccccctcctggcagagtacgactttcgcaatgat
acagtcaacccagacatcaacatagacctgaagcccactgctgtgttacggccctaccag
gaaaagagtctgcgcaagatgtttgggaatggacgtgctcgctccggggtcatcgtgctg
ccctgcggtgcgggcaaatctctggtgggtgtgacagcggcgtgcacggtgcgtaagcgc
tgccttgtgttgggtaactcttccgtttcagtggagcagtggaaggctcagttcaagatg
tggtccacgatcgacgactcccagatttgccgcttcacctctgatgccaaggacaagccc
atcggctgttcggtggccatcagcacctactctatgctgggtcacaccaccaagcgctcc
tgggaggctgagagagtcatggagtggatgcggagccaggagtggggactgattatcctg
gatgaggtgcacactatccctgccagaatgttccgtcgtgttctgaccattgtccaggct
cactgcaaaatggggctcacagccacactggtcagagaagatgacaagattgtggacctg
aacttcctgattgggcctaaactctatgaggccaactggatggaattacagaacaatggc
tacattgccaaagtccagtgtgcagaggtgtggtgcccgatgtctccagagttttacaga
gagtacgtggccatcaagacgaagaagcgcatcctgctttatacaatgaaccccaataag
ttccgcgcttgccagtttctcattcgcttccatgagcggcgcaacgacaagatcattgtc
tttgctgacaacgtgtttgcgttgaaggagtacgctattcgcctcaacaagccgtacatc
tatggcccgacctctcagggggagcgaatgcagattttacagaacttcaaacacaacccc
aaaatcaacaccattttcatctccaaggttggagacacttcatttgacttgccagaagcc
aatgttctgatccagatctcctcccatggtggatcacgcagacaggaggcccagaggctg
ggcagagtcttacgagccaagaaagggatggtagcagaggagtacaacgcatacttctat
tcactggtgtcccaggacactcaggagatggcttactccacaaagaggcagaggttcctg
gtggaccagggatatagctttaaggtgatcacaaagctggcaggcatggaggaaggggac
ttgatgttctccacaaaagaagaccaacagcagctgcttcagaaagtcctcgctgcttca
gacctggatgctgaggaggaagtggtggtggaggtgggcggacagccaaagttctcaagg
cgaacgggcaccatgagctccatgtcaggcgcagatgacaccgtctacatggagtatcag
aatcgaggcagcaaatcttccgcactaggcaagagcgtgcatccactgttcaagcgcttc
agaaagtag
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integrated database retrieval system
