Epinephelus lanceolatus (giant grouper): 117260311
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Entry
117260311 CDS
T07331
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03030
DNA replication
ely03420
Nucleotide excision repair
ely03430
Mismatch repair
ely03440
Homologous recombination
ely03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117260311 (rpa1)
03420 Nucleotide excision repair
117260311 (rpa1)
03430 Mismatch repair
117260311 (rpa1)
03440 Homologous recombination
117260311 (rpa1)
03460 Fanconi anemia pathway
117260311 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ely03000
]
117260311 (rpa1)
03032 DNA replication proteins [BR:
ely03032
]
117260311 (rpa1)
03400 DNA repair and recombination proteins [BR:
ely03400
]
117260311 (rpa1)
Transcription factors [BR:
ely03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117260311 (rpa1)
DNA replication proteins [BR:
ely03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117260311 (rpa1)
DNA repair and recombination proteins [BR:
ely03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117260311 (rpa1)
MMR (mismatch excision repair)
117260311 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
117260311 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
Motif
Other DBs
NCBI-GeneID:
117260311
NCBI-ProteinID:
XP_033488179
LinkDB
All DBs
Position
9:20245343..20280810
Genome browser
AA seq
599 aa
AA seq
DB search
MAKLSEGAIVALSNGTGGNDAVLQCVNIRKIDGGNGPARFRVMMSDGVHTLSSFMLSTQL
NYMAEENRLAPNCICILKKHVTNILKDKRRVVIILEIEVVKPAEEVAGRIGDPTPYTDGQ
VKAPQSAPVPEIRPPLQQQNTNEVKKGFSRDFGKKNPSAMPSTPGGSSKIVPIASLNPYQ
SKWTVRARVTNKSGIRTWSNSRGDGKLFSMELVDESGEIRVTGFNQEVDKFFSLIDVGKV
YYVSKGSLKIANKQYTSVKNDYEMTLNGESSIIPCEDSCEVPMVQCDFVSIGDLENRDKD
AIVDVIGVCKSVEEVTRLTTKSNKEVSKRTISLMDMSGKMVTVTLWGEEAEKFEGSGQPI
LAIKGAKLSDYGGRSLSASFSSTLMINPDIPEAYKLRGWYDKEGHAMDGQSLTEVKGSGG
GLINWKTLSDVKTEHLGHGDKADYYTCTATIVYLRKENCLYQACPSQDCNKKVVDQQNGM
FRCEKCDKEFPNFKYRLILSANIADYADNQWVTCFQESAEAILGQNAAYLGQLKDSNEAA
FDEVFQQANFNTFVFHSRVKLETYNDESRIKATVMAVKPVDHKDYSKRLIMNIRKLAAV
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagctctcagagggtgccatagtggctctatcaaatggcaccggtggcaatgac
gcagtgctgcagtgtgtgaacattcggaagattgatggaggaaatggtccagctcgcttt
cgggtgatgatgagcgatggagtacacactctgtcctccttcatgctctcaacgcagctg
aactacatggctgaagaaaaccgactggccccgaactgcatctgcattctgaagaaacat
gtgacaaacatactgaaggataaacgacgagtggtaatcattttggaaatagaagtcgtt
aagcctgctgaagaagttgctggaagaataggtgaccctactccttacactgatggtcaa
gtcaaagccccacagtctgcaccagtccctgagatccgccctccactacagcagcaaaat
acaaatgaagtgaaaaagggtttcagtagagactttgggaaaaaaaacccatctgctatg
cccagcactccagggggcagctccaaaattgtgccgatcgccagcctcaacccctaccag
tcaaagtggactgtccgcgcccgtgtaaccaataagagtggcatccgtacatggagcaac
tctcgtggtgatggcaaactcttctccatggagcttgtggatgagagtggagagatacga
gtgactggtttcaatcaagaggtggacaagttcttcagccttattgatgttggcaaggtc
tactacgtctccaagggctccctgaagatcgccaacaagcagtatacatcagtgaagaat
gactatgagatgactctcaatggagagtcaagcatcatcccctgtgaagacagctgcgaa
gttcccatggtgcagtgtgattttgtgtctatcggtgacctggagaacagagacaaagat
gccatcgttgatgtgattggagtgtgtaagagtgtggaagaagtgacccgcctcactacc
aagtccaacaaagaagtgtccaagaggaccatcagcctgatggacatgtctgggaagatg
gtgactgtgacactgtggggagaggaagcggaaaagtttgaaggctctggacaacccatt
ttagccattaaaggggcgaagctttcagactacggaggccggtccctctctgcatctttc
agcagcaccctgatgatcaacccagacatccctgaggcatataagctcagaggctggtat
gacaaggagggccacgccatggatggacagtccctgacagaggtgaaaggcagcggggga
ggactcatcaactggaagactctgtctgacgttaagacggagcacctgggacacggagac
aaggcagactactacacctgcacagctaccatagtgtacctgcgcaaggaaaactgcctt
taccaggcctgtcccagccaagactgcaacaaaaaagtggtcgaccaacagaatggcatg
ttccgctgcgaaaagtgtgacaaagagttccccaacttcaagtaccgcctcattctttct
gccaacattgcagattacgcagacaaccagtgggtgacttgcttccaggagagtgcagag
gccatcctgggccagaacgcagcttacctggggcagctcaaggactcgaacgaagccgcc
ttcgacgaggtcttccaacaagccaacttcaacacttttgtctttcacagcagagtgaag
ctagaaacatataacgatgaatccaggatcaaggccacagtgatggcagtgaagcctgtt
gaccataaggactacagcaagaggttgatcatgaacataagaaaactggctgctgtgtag
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