Epinephelus lanceolatus (giant grouper): 117260718
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Entry
117260718 CDS
T07331
Symbol
thoc3
Name
(RefSeq) THO complex subunit 3
KO
K12880
THO complex subunit 3
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03013
Nucleocytoplasmic transport
ely03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117260718 (thoc3)
09122 Translation
03013 Nucleocytoplasmic transport
117260718 (thoc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ely03019
]
117260718 (thoc3)
03041 Spliceosome [BR:
ely03041
]
117260718 (thoc3)
Messenger RNA biogenesis [BR:
ely03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117260718 (thoc3)
Spliceosome [BR:
ely03041
]
Complex C
Other components
EJC/TREX
117260718 (thoc3)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117260718 (thoc3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
Beta-prop_EML_2
WD40_Prp19
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WDR55
ANAPC4_WD40
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
Beta-prop_Aladin
WD40_Gbeta
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
eIF2A
Beta-prop_Vps41
Beta-prop_EML
DSE1_N
Beta-prop_WDR36-Utp21_1st
WD40_RFWD3
Beta-prop_TEP1_C
Beta-prop_NOL10_N
RMC1_N
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
NBCH_WD40
Tricorn_2nd
WDR90_beta-prop_4th
PD40
Beta-prop_ACSF4
TRM82_WD
B-prop_COPA_B_2nd
PAC11
Beta-prop_SPT8
Beta-prop_WDR75_1st
ASA1
Beta-prop_EIPR1
Beta-prop_NUP159_NUP214
Beta-prop_WDR41
Peptidase_S9_N
Beta-prop_Nup120_160
Beta-prop_NWD2_C
WD_LRWD1
Cytochrom_D1
Beta-prop_WDR11_1st
DPPIV_N
Beta-prop_ELP1_1st
YNCE
TP_0598_N
PROPPIN
Beta-prop_SCAP
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
117260718
NCBI-ProteinID:
XP_033488659
LinkDB
All DBs
Position
7:complement(44664423..44670709)
Genome browser
AA seq
322 aa
AA seq
DB search
MASQYYQEMQESFRNNNKSREFPAHTAKVHSVAWSCDGRRLASGSFDKTASVFILEKDRL
VKENNYRGHGDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICW
SPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNDMFFLTNGNGCINIL
SYPELKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDVDELVCVRCFSRLDWPV
RTLSFSHDGRMLASASEDHFIDIAEVETGEKLWEVQCDSPTFTVAWHPKRPLLAYACDDK
EGKYDNNREAGTVKLFGLPNDS
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcagtactaccaggagatgcaggagagcttcagaaataacaacaagagtcga
gagttcccggctcacacagcgaaggtgcactcggtggcgtggagctgtgatggaagaaga
ctggcctccggatcttttgataaaacagccagtgtgttcatcctggagaaagaccgtctg
gtgaaagagaataactacagaggtcatggtgacagcgtggatcagctctgctggcatcca
accaaccctgatctgtttgtcacagcatccggagacaagaccatccgtatatgggacgtc
cgtaccaccaaatgcatcgccactgtcaacaccaaaggagagaacatcaacatctgctgg
agccctgacggtcagaccatcgctgtggggaacaaagacgatgtggtgaccttcatcgac
gccaagacgcaccgctccaaggcagaggagcagttcaagttcgaggtgaacgagatctcc
tggaacaacgacaacgacatgttcttcctcacaaacggcaacggctgcatcaatatcctg
agttatccagagctgaagcccatccagtccatcaacgctcacccatccaactgcatctgc
atcaagtttgaccccacggggaaatacttcgccacaggaagtgccgacgccctcgtcagc
ctgtgggacgtggatgagctggtgtgtgtccgctgcttctccaggctggactggcctgtg
aggacgctgagcttcagccatgatggcaggatgttggcctcggcctctgaggatcacttc
atagacatcgcagaggtggaaacaggagagaagctgtgggaggttcagtgtgactctccg
accttcaccgtcgcctggcacccaaagaggccgctgctggcctacgcctgcgacgacaag
gagggcaaatacgacaacaaccgagaggccggcaccgtcaaactgttcggcctccccaac
gactcctga
DBGET
integrated database retrieval system