Epinephelus lanceolatus (giant grouper): 117260902
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Entry
117260902 CDS
T07331
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117260902 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ely03021
]
117260902 (polr1a)
Enzymes [BR:
ely01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117260902 (polr1a)
Transcription machinery [BR:
ely03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
117260902 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
HMG_box_2
DUF2277
CDC45
Motif
Other DBs
NCBI-GeneID:
117260902
NCBI-ProteinID:
XP_033488911
LinkDB
All DBs
Position
10:14736562..14768570
Genome browser
AA seq
1699 aa
AA seq
DB search
MLFGKDVPWRRLEGMSFGMYSAEEIRKLSVKTITNFRFLDAVGNVAPNSLYDLALGPADS
KEVCSTCCQDFNNCPGHLGHVELPLPVYNPLFFDKLYLLIRGSCLSCHMLTCPRAAIHLL
LNQLKLVDHGAMQDVYQIEQVLSQHLEENPKATGDEIEQVLKQFTHTVVGVNAEASENTK
PIKHLVEKKSSLINDFWKIHMKTRKCPYCRGGRVTVRREHNSKLIVTMPSGAQTIVNTDE
DLIAGKRVYLTASTAREHTNKLWEREGFFLKCLFSGLEEGSVSKEGEKGFYPDLFFLDLL
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGLIRKLLALIAGEKTTQEEEAPEQTDQ
TFLAGIPGQTLTDKLYNIWIRLQTHVNIVFDSDMDKMMTEKYPGIRQILEKKDGLFRKHM
MGKRVDYAARSVICPDMYIETNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPSVHP
GASMVINEDGRRTILSATNLAQREAVAKQLLTPCPGPHKMPMKIVNRHIKNGDVMLLNRQ
PTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYMLVS
TDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRVQYIELVYRGLTDKPGRVKLLPP
AILKPQPLWTGKQVVSTLLLNVIPQNAVPLNLFGKSKIPSKAWIQVPPRAAPGYKPDSMC
DSQVVIRRGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYR
GFTLGVEDILVKPGANRQRKKIIQESLKIGTKALQAAFNLPSNVDQAEAQSRWQDAHLNP
DQRDFSMADHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKSLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQ
PRQFPFIEDNYEVIKRSQGLDEVLARLDPQAASKHFASIQRWKTKREMACPRRGAFLLFS
QKKLAKLKQNEQMTEPDVHGRNAAVHQLIQQWHSLDESSRSKYIRKSTRCPEPSLGLLRP
DVCFGSVSENFHNITEKYLQSEGRTRQDSLDTHSLRQLLNYKWQRSLCDPGEAVGLLAAQ
SIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNTKKALKR
AKMLRKKLTRVCLAEVLQKIDVVEKLRIENHHKLRSFRVTFNFLPPDRYCDDKLLSPHQI
LHYMETRFFRLLLEAIKKRSAKLASIAVETRKATPRDRDNDGDGTADTAGLDDGEGEEER
EIVDDQANEGDADASDAKRKGKQEEEVDYESEDEDKADDGEDKEDQGEEEEEVEENVEKT
TPEESQPESAGMRMERKNKRAKGGRGGGDGEAEEALNQMRVNSVLESNSAIERYCYDQQH
ELWCEVDLVLPVSKVHFDLTSVLSTLAQNAVIMETKGLTRCLLSETTTKTGEKETVLNTE
GINMHEMFKHSDILDIKRLYSNEVHAMAKTYGIEVALKVIEKEIKDVFAVYGIEVDPRHL
SLVADYMCFEGVYKPLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLV
VGKVVKGGTGLFELKQPLQ
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttggaaaagatgtgccatggcggcgactggaaggcatgtcgtttggcatgtac
tctgccgaagagataaggaagctgagtgtgaagaccatcactaacttccggttcctcgat
gctgttgggaatgtggccccaaacagcctctacgatctggcccttggaccagctgacagc
aaagaggtgtgttcaacctgctgtcaggacttcaacaactgtccaggacatctcggacac
gtagagctgcctctacctgtttacaacccacttttctttgataaactctacctgttgatt
cgcggatcctgtctttcatgtcacatgttaacgtgtccccgagcagccatccacctgctg
ctgaaccagctgaagttagtggaccatggagccatgcaggacgtctaccaaatagaacaa
gttctcagccagcacctagaggagaatcccaaagccactggagatgagatcgagcaggtg
ctcaagcagtttacacacacggtagttggagtgaacgctgaagcttcagagaacaccaaa
ccaattaaacaccttgttgaaaagaagagcagtctgataaatgacttctggaagatccac
atgaagacgaggaagtgcccatattgcaggggcggcagggttacagtgcgccgtgaacac
aacagtaagctgattgtcacaatgccatcaggagcacagaccattgtcaatactgatgaa
gatctgatagctggaaagagagtctacctgacagctagtactgcaagagagcacaccaac
aaactgtgggagagagaaggtttcttcttgaagtgtctgttctctgggctggaggagggg
tcggtgtcaaaggagggagagaaaggtttctatccagacctgttcttcctggatctgctg
gtggtcccaccttgcaggtaccgtccaatcaatcgacttggtgaccagatgtttacaaac
ggtcagacagtcaacatgcaggctgtcatgaaggactgtggactcatacgcaaacttctg
gctctcatagcaggagagaaaactactcaggaggaagaggctcctgagcagacagaccag
acattcctggccgggatccccggacagactctgacagataaactctacaacatctggatc
cgactgcagacccacgttaacatcgtctttgacagtgacatggacaaaatgatgacggag
aaataccctggaatcagacagattttggagaagaaggacggattgttccggaaacacatg
atgggaaaacgagtggattacgctgcacgatctgtcatctgtccagacatgtacattgag
accaacgagatcggaataccaatggtgtttgccaccaagctgacctacccccagcccgtc
actccctggaacgtgaaggagcttcgccaggcagttctcaacgggcccagcgtccacccc
ggtgcttccatggtgatcaatgaggatggcaggaggaccatcctatcagctaccaacctt
gcacagagagaagctgttgccaagcaactgctgacaccctgtcctggtccacataagatg
cccatgaagattgtgaatcgtcacataaagaacggagatgttatgttactaaacagacag
ccaactctgcacagaccctccatacaagcccactgtgcacgcatcttaccaggagagaag
gtactaagactccactatgccaactgcaaggcgtacaatgctgattttgatggagatgaa
atgaacgcacacttccctcaaagtgagctgggcagagcagaggcctacatgttagtcagc
actgaccagcagtacctcgtccccaaggatggtaaacctttagcaggtctgatccaggac
cacatggtatcgggtacaaggatgacgatacgaggctgtttcttcaccagagtccagtac
attgagttggtgtacagaggactgacggacaaaccaggcagagttaaactgctgccgccg
gccatactcaaaccacagccactgtggacaggaaagcaggtggtgtctacgctcctactg
aatgtcatcccacagaacgctgtgcctctcaacctgtttggcaaatcgaaaatcccaagc
aaagcatggatccaagtcccgccacgagctgctccaggatataaacctgacagcatgtgt
gactcacaggtggtgattcgtcggggggagctgttggtgggggttctggacaaagctcac
tacggctcctcagcctacggtctggtccactgctgctacgagctgtacggaggggagacc
agcggcaaactgctcagctgcctggctcgactcttcactgcttacctgcagctgtacaga
ggcttcactctgggtgtggaagacatcctggtgaagccaggtgccaacaggcagaggaaa
aaaatcattcaagaatcactgaagattggcactaaagccctccaggcagccttcaacctg
ccgtccaatgtggatcaagctgaggctcagagccgctggcaggacgctcacctcaaccca
gaccagagagacttcagcatggccgaccacaagttcaaagaagtggccaaccaagtgaac
aacgacattaacaaggtgtgcatgccagttggactacacacctctttccccgacaacaat
ctccaactcatggtccaatcaggagccaagggatctactgtaaacaccatgcagatttca
tgtctactaggtcagatcgagttagagggccgtaggcctccactgatgccttctgggaaa
tctttgccgtgcttccagccatatgacccttcacccggtgccgggggcttcgtctctgga
aggttcctcacaggcattaaacctcaggagtttttcttccactgtatggccggcagagaa
ggactggtcgacacagctgtgaaaacatctcgatcaggatacctgcagagatgcgtcatc
aagcatctggagggtttggtggtgcagtatgatctgacggtgagggacagcgatggatct
gtggtccagttcctgtatggcgaagatgggctggatatccccaagactcagttcctgcag
ccgagacagttccccttcatagaggacaattatgaggtcatcaagaggtcccagggcctg
gatgaggttttggcacgtttggaccctcaggctgccagtaaacactttgcatccatccag
cgctggaaaacaaagagagagatggcatgtccacggagaggagcgttcttgctgttttcc
cagaagaagctggccaaactgaaacagaatgagcaaatgacagagccagatgtccacggc
agaaatgctgctgtacaccagctcatacagcagtggcactctctggatgagtccagcaga
tcaaaatacattaggaagtcgacccgctgccctgagccctctctgggcttgttaaggccc
gacgtctgcttcggatcagtttcggaaaactttcacaacattacagagaaatacctccag
agcgaaggcaggacgaggcaagacagcctggacacccacagccttcggcagctgttgaac
tataaatggcagcgctcactgtgtgacccaggtgaagcagtgggtctgctggcagctcag
tccataggcgaaccctccacccagatgaccctcaacaccttccactttgctggtagagga
gagatgaacgtcactttgggaatacctcgactgagagagatcctgatggtggccagctcc
aacatcaaaactcccatgatgagcgttccagtgcttaacaccaagaaagccttgaagagg
gcgaagatgctccgtaagaaacttaccagagtctgtctggctgaggtgctgcagaagata
gatgtggttgaaaagttgcggattgaaaatcaccacaagctgcggtcgttcagagtcacc
tttaacttcctgcctcctgaccgttactgtgacgataagctgctatcaccccatcagatc
ctccactatatggaaactaggtttttccgtctcctcctcgaagccattaagaagcgcagt
gccaagcttgcctccatcgccgtggaaacgaggaaggccacccccagagatagagacaat
gatggcgatggaacagctgacacagcagggttagatgacggcgagggagaagaggagcga
gagattgttgatgaccaggcgaacgaaggagacgccgatgcttcagatgccaagcgaaaa
ggcaaacaggaagaggaggtggactatgagagtgaggacgaggacaaagctgatgacggt
gaggataaagaagatcagggggaagaagaggaggaagtggaggagaatgtggagaagacg
acaccggaggagtcccagccagagtctgcaggaatgagaatggagaggaagaataaacga
gccaaaggagggagagggggcggggatggagaagcagaggaggccttgaatcagatgagg
gtgaactctgttctggagtccaactcggcaatagagagatactgctacgatcagcagcat
gagctctggtgtgaggttgacctggtcttaccggtgagcaaggtgcattttgacctgacc
tcagtcctgtcaacactggcccagaacgccgtcatcatggagaccaaaggcttgacacgc
tgcctgctgagcgaaactacaacaaagacgggagagaaagagacagtcctcaacacagaa
ggcatcaacatgcacgaaatgttcaagcacagtgatatcttggacatcaaaagactgtac
tccaatgaggtccacgccatggctaagacctatgggattgaagtggctctgaaggtcata
gagaaggaaatcaaagatgtctttgctgtctatggtatcgaggttgaccccagacacctg
tcactggtagcagattacatgtgttttgaaggtgtatacaagccattaaaccggcacgct
atccggtccaactcttcccctctgcagcagatgaccttcgagaccagctacaaattcctc
aaacaggctaccatgctggggtcacacgatcagctggtgtcaccgtcagcctgcctggtg
gtgggaaaggtcgtcaaaggtggaacaggactgtttgaactcaaacaacctctgcagtag
DBGET
integrated database retrieval system
