Epinephelus lanceolatus (giant grouper): 117261059
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Entry
117261059 CDS
T07331
Symbol
pcdh20
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-20
KO
K16498
protocadherin delta 1
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117261059 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ely01009
]
117261059 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ely04515
]
117261059 (pcdh20)
Protein phosphatases and associated proteins [BR:
ely01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117261059 (pcdh20)
Cell adhesion molecules [BR:
ely04515
]
Cadherins
Protocadherins
117261059 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
117261059
NCBI-ProteinID:
XP_033489159
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All DBs
Position
10:23184263..23188109
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AA seq
891 aa
AA seq
DB search
MNSAFSCAGLGCRLCPXCSFAAGGTWVTCARAMGHGTPDNMNWAGLLQNLLVVVHLQQII
CGSVWFSIPEEQEPGILAGSLSKHFPPPYQLLTQEYLWMDKNTGNFYTTEQKMDREALCP
EETKAEECIILHNAVVGPSGDLIQFPVIIEDINDNAPHFENSEIHLRVSEDVTVGTSFLL
DDQAQDSDAGHNGELHYHLEDSNGVFSLKVDGDEPVIMLVVQTALDRETRDLYQMALVAT
DSGADPLSATATLIVTVTDVNDNCPSFSADSPRSVTIPGDSKKNMLVAQVRATDPDSGPN
AAIVYSLSPKVSERAKKLFSLDSLTGSIRLTQDLQSDNSEELLLKVLAIGHHCPPADIQV
TISVVPKANQELAIKIGFIAEHQNQTMVIPENQPPTVLAVLELEGDSGFKGSSLAIESEV
PFTLSPQNGKYLLSTSKPLDYEMKSEHHISVVVHGRSAEGSVIAPSRRVIRVLVADVNDN
APHFLQSHYQLEVEENNQPGMSLLWVSASDADSGYNGRVTHRLDKHTSTIFNIDPVTGQL
SVSASLDREQQGVHKLTVFARDSGSPPLESVATVSIRVLDQNDNAPVFLTPHFIFFIPEN
VPPLAPVGRVGVTDPDEGENGNTELHVVNSSGPFVVDNTQGTLRTTTNLDRETDDRYELY
LLASDHGHPLALTSLARVTIFVEDINDNQPKVILPSSNSSCQTVSPGTIAGTIVTKIYAI
DEDSGLNSEITYTVVAPEPAQNSSPFQVDSRSGNITVAQQLLRKDLGMHHLFIVVRDGGK
PAPLYTTVWVNLLVNESMGPCLLDRAPTWTGTSDLVQTPSKASICEVEDTRSARLTLLVG
LGMMLASTCLLVAAAVLYLKQRRRSLQQNKRGHIEENEIPLRLKDKYYSDD
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgccttcagctgtgcaggtttaggttgccgtctctgtccttaatgttcattt
gctgctgggggaacttgggtaacatgtgcgagggcgatgggccatgggactcctgataat
atgaactgggctggactactgcagaatctgctggttgtggtccatctgcagcagatcata
tgcggttctgtctggttttccatcccagaggaacaggagcctggtattctggcggggtca
cttagtaaacactttccacctccgtaccagctcctgacccaggagtacctgtggatggac
aaaaacacagggaatttctacaccactgagcaaaagatggatcgcgaggccctctgcccc
gaggagacaaaagctgaggaatgcattattttacacaatgctgtcgtggggccctctgga
gaccttatacagttccctgtgatcatagaggacatcaatgacaatgcacctcattttgaa
aacagtgaaatacacctgagggtgtctgaggacgtgactgtggggaccagtttcttattg
gatgaccaggctcaggacagtgatgccggacataacggcgagctgcattaccacctagaa
gattcaaatggagttttcagtttgaaagtggacggagacgagcctgtcatcatgctggtt
gtgcaaacagctctagacagggagactcgggacctgtatcagatggcgctggtggccacc
gacagtggcgccgaccctttaagtgctacagcaactttaatagtcacagtgacagatgtt
aatgacaactgtccaagcttcagcgccgacagcccccgcagtgtcaccatccctggtgac
tccaagaagaacatgctggttgctcaggtcagagccacagacccagattcaggcccaaat
gctgccatcgtatactccctcagtcccaaagtctctgagcgggccaagaagctctttagc
ctcgacagcctcactgggtccatcagactaacacaggacctccagagtgacaactccgag
gagctgctgttgaaagtgttagctatcggccatcactgccccccagcagacattcaggta
accatatccgtggtccccaaggcgaaccaagagctggcgatcaagatcgggttcatagca
gagcatcaaaaccagactatggtgataccagagaaccagccccccaccgtcttagctgtt
ttagagcttgagggtgacagcggctttaaaggctcatctcttgccattgagagcgaggtg
cctttcactttgagcccacagaatggcaaatatctgctttccacatcaaagcctctagac
tatgagatgaaaagcgaacatcatatttctgtggtagtgcacgggagatcagccgaagga
tctgtgatcgctccttccaggcgtgtgatcagggtgttggtggcagatgtcaatgataat
gctccacatttcctccagtctcactaccagctggaggtggaggaaaacaaccagccaggg
atgtccctgttgtgggtctcagcgtcagacgcagacagcggatacaatggcagagtgacc
cacaggctggacaagcacacatctaccatctttaacattgaccccgtgacaggtcaactg
tccgtgtcagcctctctggatagggaacagcagggcgtacacaaactcactgtgtttgca
cgagatagcggctctcctcctttggagtcagtggccacagtatccattcgtgttctggac
cagaatgacaatgcacctgtttttctaacccctcacttcatcttttttatccctgagaat
gtaccaccgcttgccccagtagggagggtgggggtgacagacccagacgaaggagagaat
gggaacacagagctgcatgttgtaaacagcagtggaccttttgttgtagataatacccag
gggacgctgcgcaccaccacaaacttggaccgtgagacagacgaccgctatgaactctac
ctgctggccagtgatcacggacacccactcgctttaacttcccttgccagggtaactatc
tttgtggaggacatcaatgacaaccagccaaaagtgatccttcccagcagcaactcctca
tgccagactgtctctccaggaactatcgcaggcaccatagtaacaaagatctatgccatc
gacgaggactcagggctgaactcagagattacatacaccgttgttgcaccggagccagca
caaaatagcagccccttccaggtggattcaaggtcggggaacatcaccgtggctcagcaa
cttctacgaaaagacctaggaatgcatcacctgttcattgtggtcagggatggggggaaa
ccagctccgctttatacaactgtgtgggttaacctgttggtcaacgagagcatggggccc
tgcctcttagacagggcccccacctggacagggacatctgacttggttcaaaccccctca
aaggcctccatctgtgaggtggaggacaccagatctgcccgactgacactgttagtaggc
ctgggcatgatgctggcgtccacatgtttgcttgtggcggcagctgttttatacctgaaa
cagaggaggagaagtctacagcagaacaagagggggcacatcgaagagaacgagattcca
ctcaggctcaaagacaaatattactctgacgactaa
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