Epinephelus lanceolatus (giant grouper): 117262327
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Entry
117262327 CDS
T07331
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117262327 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ely03019
]
117262327 (edc4)
Messenger RNA biogenesis [BR:
ely03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117262327 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
117262327 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
RMC1_N
WDR55
PIN_8
Motif
Other DBs
NCBI-GeneID:
117262327
NCBI-ProteinID:
XP_033491115
LinkDB
All DBs
Position
11:complement(13351604..13385851)
Genome browser
AA seq
1392 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSTDAPSTDGPRMPSFNGELNGLLGAAGLLGGTD
RSTMSESSRPISTDLSSAQECQIICLSGDDRSTCIPITSNNVEIVASQDSSINSKARGSN
KVKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSVSFAERSLLKGFTG
AVTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTGNKILDQVVVHIQRPENTPLNSHRRLIW
CPFIQDDNEENQDDTSQTLALLHEDMAEVWDLEVLRANNSSWPVDSTDVKEGLITVKGHN
QRVSEGALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHGGRPLSCLLFCDN
HKRQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDLFNSSVLPSLKASVDLS
AEYLILTDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVRDVAHSRLRHTEV
LTAEEESESMTTEGTQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPNLGSSSAAFLPHSD
SQDGFAGFSDHLTDQSSDKESGSGSQTDLRKIPSLPAPTDFLSNSGASSGTKLMTPDAFM
TPSTSVPASPGSSASSLTIVTAISSNSDSTNRAIDDVSQSPNRAENNSSSSLAVSTSTSS
PRAASAVLLPGLESLQALASPSGPLALDSPQVLDSPLLPPLASPTRARSPDVISSASTAM
SQDMPEIASQTLQLQRGMVSSLEPLPLSALQTDSMASAASALHLLTSPRTANSNSLLPLE
LGGADGSVGGAVESEPRLSHTPSLLENALSQENPGVGGGSSDGSVSHTPWPAAPDITRET
RNSLRDNGLGDCSRDESNDRHLSSPYHRRSYHLTQNDSQEAGAEQSDPDDEVASLASSSG
NCGSRSSHRLPVKDWKTSPRGSPKVKRKTKKDDSESSQSRQMDSGQINAEVQDELLMLLR
SQQRELTELRGQIEAMQSTIMAQVEHVLTNHQEQEQRRLERVLAESQNHQQQLQEQLSQQ
LSHTLSTVLTNRMDKVLREEMKKTVPQTISKSLEPVTGQLNNTIAAKLTAVEVTLKDNVS
KVVKSKNTTDAIGRAAAEAMQGPIQAAYKDTFQSIVLPVFERGCQSMFQQINDSFKQGTQ
EYIQQLETHVKNRKQREQESRDPMIGQLQQMIDSFQSSTDQLANNITANVRADVQHQIQM
MVGNLQESILSHVQRIVKGEVSLAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQQA
NILQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCPLSQPVLLSLIQQLS
SNLSTRSELKISYLEDAVMNLDHGDPLTRDHMSSVLAQVRPKLFTFLQQDPHSPLSKRAR
RLMMMLQGLVSH
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaattctaacatagatattgagggtgcgacccagcatcttcgggacatcctc
aagctcgaccgtcccgggaacagcaccgatgcaccatcgactgatggcccaagaatgcca
tcttttaacggagagctgaatgggctattgggagcagcaggccttctgggaggcactgat
cggtccaccatgtcagaatctagcagacccatctccacagacctcagcagtgctcaggag
tgtcagataatctgcctttcgggtgatgatcgctccacctgtatccccatcacctccaac
aatgtggagattgtggcaagtcaagattccagcatcaacagcaaggctcgtggcagcaac
aaggtgaagattcaacctgttgccaagtacgactgggaacacaaatattattatggcaga
ctgatagccgtgtccaactccttcctggcctacgccatcagaggagccaataaccatgca
atgattcgtgtcctgagtgtgagtttcgccgagcgctcccttctgaagggcttcactgga
gctgtcacagatctggcttttgcccacctcgactcctccctgttgggttgtgtagatgaa
gcgggcaacttgatggtctggcagctcacctgcactggaaacaagatacttgatcaggtg
gtggttcatatccaacggccagaaaacactccactgaactctcatcgtcgcctcatctgg
tgcccgttcatccaggatgacaatgaggagaaccaggacgacaccagccagaccttagcc
cttcttcacgaagacatggctgaggtgtgggacctggaagtcttgagggccaacaatagc
agttggcctgtcgattccacagatgtaaaagaaggcctcatcacagtcaagggacataac
cagcgagtcagtgaaggggccctgtctccagatggaacggtgttagccacagccagccat
gatggatacatcaagttctggcagatatacattgaggggggacaggataagccaagatgt
cttcatgaattgcggccccacggaggacgtcccctttcctgccttcttttctgtgacaac
cacaaaagacaggacccagaagttcctttctggcggttcctcataaccggagcggatcag
aaccaggagttgaaaatgtggtgcacagtttcctggacctgtttacagaccatcaggttt
tctccagatctgttcaactcatcagttctgccgagtctgaaggccagtgtggacctctct
gctgagtatcttatcctcaccgacgtacagaggaaggttctgtatgtgatggagttgcgg
caggatctggagaaaggcaaggccagtttcacagcggtgtcagagttcctgctgacccac
ccagtgctcagctttggggtccgggatgttgcccacagccgattgcgacacactgaggtc
ctcactgcagaggaggagagcgagagcatgacaacagagggcactcaaggacccacagag
tctaagtctgggatacaaataaaactctactgtgttcacaccaagagtctgcaggatgtc
cagatctggtttcagcccaacttgggttccagctctgcagccttcctgccccattctgat
tcccaagatggttttgcagggttttcagaccatcttactgaccagagctctgacaaggaa
tcaggaagtggctcccagactgacctaaggaagatcccatcgcttcctgctcccactgac
ttcctgtcaaactcaggcgccagcagtgggaccaagctgatgactcctgacgcattcatg
acaccaagtacttcggtaccggcctctcctggcagcagtgccagcagtctgactattgtg
acagctatcagcagcaactcagactcaactaacagagctatagacgatgtgagtcagagt
cctaacagagcagagaacaacagcagcagcagtttggcagtctccacctccaccagcagc
ccaagagctgcctctgctgtgctgctgcctggactggagagcctacaagctttagcgtcc
cctagtggtcctcttgcactcgacagccctcaggttctggattctcccctcctgccacct
ctggcttctccgaccagggcacgctcccctgatgtcatttcctcagcctccacagccatg
tcccaggacatgccggagattgcatctcagactctgcagcttcagcgtggaatggtgtca
agcttggagcccttacctctttctgcccttcagacagacagcatggcctctgctgcgtct
gcgctgcaccttctcacctcaccacgtacagccaacagcaacagcctgttgcccctcgaa
ctcggaggtgctgatggatcagtgggcggggccgtagagtcagagcccagactcagtcac
accccatctttacttgagaacgccttatcacaggagaaccctggggttggtggagggtcc
tcagatggtagtgttagccacacaccttggccagctgcacccgatatcacgagagaaacc
aggaacagtctgagagacaacggtcttggtgactgttcaagagacgagtcaaacgacaga
cacttgagctcaccttaccatcgacgctcctatcacctcacacagaatgacagtcaggaa
gctggcgcagagcagagtgaccctgatgatgaggtggccagccttgcatcatcctcagga
aactgtggttctcgttcttctcacagactaccggttaaggactggaagacctcgccacga
ggctcgccaaaagtaaagaggaagaccaagaaagatgacagtgaatcatctcagtccagg
caaatggactctggtcagataaatgcagaagtacaggacgagttgttgatgctgctgcgc
agccagcagagggagttgactgaactgcgaggacagattgaagctatgcagagcactatt
atggcccaagtagagcacgtccttaccaaccaccaggaacaagagcagcgcagactagag
cgagttctggcagagagtcagaatcatcagcagcagcttcaggaacaactcagccagcag
ctcagccacaccctcagcacggtgctaaccaacagaatggacaaagtgctacgagaggag
atgaagaaaacagtcccacaaacaatctcaaagagtctggagccagtgacaggtcagctg
aacaatacaattgctgctaaactgaccgctgtggaggtcaccctgaaggacaatgtcagc
aaggtggtcaaatcaaagaatacaacagatgcaattggtcgagcagcagctgaggcgatg
caggggcccatccaagcagcctataaagacaccttccaaagcatcgtgctgcctgttttt
gaaagaggctgccaatccatgttccaacaaatcaacgacagcttcaaacaaggcacacaa
gaatacatccaacagcttgagacccatgtgaagaacagaaagcagagggagcaggagtca
cgagaccccatgattggccagctccagcagatgatcgacagcttccaaagctccactgat
cagctggccaataacatcacagctaacgtccgggcagacgtccagcaccagatccagatg
atggtgggaaatttgcaggagtctattcttagccacgtgcagcgaattgtcaaaggggag
gtgagcctggcaatgaaggagcagcaggcagtggtgacctccagcatcatgcaggcaatg
aggtcggcagctggcacgcccgtccccacagcacacctagactaccagacacagcaggcc
aacatcctgcagctcctccagcagggccagctcaaccaggctttccagcaggctctgtca
gcaacagatctgaacttggtcttgtatgtgtgtgagaccatcgactctcagcaggtgttt
ggtcagcacccctgccctctcagccagcccgtgctgctgtcgctcatccagcagctctcc
tccaacctctcaacccgctctgagctcaaaatcagctacctggaggatgcagtgatgaac
ctggaccacggggacccgctgacaagagaccacatgtcctccgtgctggcccaggttagg
ccgaagctctttaccttcttgcagcaggacccccacagcccgctcagcaagagggcgcgg
cgcctaatgatgatgctgcagggtctcgtcagccactag
DBGET
integrated database retrieval system
