Epinephelus lanceolatus (giant grouper): 117262997
Help
Entry
117262997 CDS
T07331
Name
(RefSeq) probable histone deacetylase 1-B isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03082
ATP-dependent chromatin remodeling
ely03083
Polycomb repressive complex
ely04110
Cell cycle
ely04330
Notch signaling pathway
ely04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117262997
03083 Polycomb repressive complex
117262997
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
117262997
04350 TGF-beta signaling pathway
117262997
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
117262997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ely03036
]
117262997
Enzymes [BR:
ely01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
117262997
Chromosome and associated proteins [BR:
ely03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
117262997
HDAC complexes
Sin3A-HDAC complex
117262997
BRAF-HDAC complex
117262997
REST complex
117262997
SHIP complex
117262997
MiDAC complex
117262997
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
117262997
Heterochromatin formation proteins
Other heterochromatin formation proteins
117262997
Chromatin remodeling factors
NuRD complex
117262997
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Glypican
RNA_polI_A34
Motif
Other DBs
NCBI-GeneID:
117262997
NCBI-ProteinID:
XP_033492011
LinkDB
All DBs
Position
12:complement(41394084..41408256)
Genome browser
AA seq
482 aa
AA seq
DB search
MALSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAS
GEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAG
ALKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLGG
GGYTIRNVARCWTYETAVALDCSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDAPHPDSGDEDEEDPDKRVSIRAHDKRIACEEEF
SDSEDEAEGQGGGRRNAANHKKAKRVKKEEEKEGEEKKEVKEEEKEEEKMDTSGPKEELK
TT
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtctcaaggaacaaagaaaaaagtttgctattactatgacggggatgttggg
aactactactacggccagggccatcccatgaaaccccacaggatccgcatgacacacaac
ctccttctcaactatgggctgtacaggaaaatggagatctatagaccgcacaaagccagt
ggtgaagagatgacaaagtaccacagcgatgactacattaagttcctgaggtccattcga
ccagacaacatgtctgagtacagcaaacagatgcagagattcaatgtcggagaggactgc
ccagtgttcgatggtctgtttgagttttgccagctttcaacaggtggatctgtcgccggg
gcactgaagttaaacaagcagcagacagacatcgccatcaactgggccggcggactccac
cacgccaagaagtctgaggcctcgggtttctgctacgtcaacgacatcgtcctggccatc
cttgagctactcaaataccaccagagggtgttatacatagacattgacatccaccatggt
gacggagtggaggaggcgttctacaccacagacagggtcatgactgtctcttttcacaaa
tatggggaatacttccccggcactggagacctgagggacatcggagctgggaagggcaag
tactatgcagtaaactacccgctcagagacggtatcgatgatgagtcctatgaagccatc
ttcaaacctatcatggctaaagtcatggagatgtaccagccaagtgcagtcgtgctccag
tgtggagcagattctctttctggagacagactgggctgcttcaacctcaccatcaaagga
cacgccaaatgtgttgaatacatcaaaagtttcaacctgcccctgctaatgctgggtggc
ggaggctacaccattcgcaatgtggcccgttgctggacatatgaaaccgccgtcgccttg
gactgttcgatccctaacgagctgccctacaatgattactttgagtactttgggcccgac
ttcaagctgcacatcagcccgtccaatatgaccaaccagaacaccaacgaatacctggag
aagataaagcagcgtctgtttgaaaacctccgtatgctgcctcatgccccgggtgtccag
atgcaggcaatccctgaggacgctccccacccagacagtggagacgaggatgaggaggac
cctgacaaacgcgtctctatccgggcccacgacaagaggatagcctgtgaagaggagttt
tctgactcggaggatgaggcggagggtcagggagggggccgcaggaacgcagccaatcac
aagaaggccaaacgagtcaagaaggaggaagagaaggaaggagaggaaaagaaagaagta
aaagaagaggagaaggaggaggagaagatggacacatcaggaccaaaagaagagttgaag
acaacttga
DBGET
integrated database retrieval system
