Epinephelus lanceolatus (giant grouper): 117263211
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Entry
117263211 CDS
T07331
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely04510
Focal adhesion
ely04512
ECM-receptor interaction
ely04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117263211 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117263211 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117263211 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ely00536
]
117263211 (col1a2)
Glycosaminoglycan binding proteins [BR:
ely00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117263211 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
117263211
NCBI-ProteinID:
XP_033492303
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All DBs
Position
12:complement(30836960..30855777)
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AA seq
1356 aa
AA seq
DB search
MLSFVDTRILLLLAVTSYLASCQHSGRVKGPRGEKGPRGDRGPQGPNGRDGKPGLPGPAG
PPGPPGLGGNFAAQYDGVKAPDPGPGPMGMMGARGPPGPPGPPGAQGHTGHPGEPGEPGQ
TGPVGPRGPPGPPGKSGEDGNNGRPGKPGDRGAPGPQGARGFPGTPGLPGMKGHRGYTGL
DGRKGEPGGAGPKGEPGAHGAAGSPGLAGSRGLPGERGRAGPAGPAGARGADGNVGPAGP
AGPLGAAGPPGFPGGPGPKGEIGPAGATGPSGAQGARGEPGPNGAVGPVGPPGNPGNNGL
NGAKGAAGTPGVAGAPGFPGPRGGPGPQGPQGATGQRGLAGDPGAQGVKGDGGPKGEPGN
SGPQGPPGPQGEEGKRGPTGELGATGPAGNRGARGAPGSRGMPGSEGRTGPIGMPGARGA
TGAAGPRGPPGDAGRAGESGPAGLRGLPGSPGSSGPPGKEGPAGPAGQDGRGGPPGPTGP
RGQPGNIGFPGPKGPSGEAGKPGDKGATGPTGLRGPPGPDGNNGATGATGPAGGPGEKGE
QGAAGAPGFQGLPGPAGGAGEAGKPGDRGIPGDQGVSGPAGAKGERGNPGAAGASGPQGP
IGPRGPAGAPGTDGGKGEPGAAGAAGGPGHQGPGGMPGERGAAGPPGGKGEKGEAGHRGP
DGNAGRDGSRGLPGPAGPPGPTGANGDKGESGAFGPAGPAGARGAPGERGEVGPAGAPGF
AGPPGADGQTGARGERGPSGGKGESGPAGPAGPAGQSGPPGASGPAGPTGARGDTGPPGL
TGFPGAAGRVGAAGPAGIVGPPGAAGPAGKDGPRGLRGDPGPSGPSGDQGMVGPPGPSGE
KGPSGEPGPAGAPGAPGSSGPLGLQGFVGLPGARGDRGSPGGAGAVGEPGRVGPAGPAGA
RGAPGNIGLPGMTGPQGEAGREGNPGNDGPPGRPGAPGFKGDRGEPGPAGAMGLAGAPGP
AGPTGAAGRPGNRGESGPGGPAGAVGAAGARGAAGPAGSRGEKGVAGEKGERGMKGLRGH
AGLQGMPGPSGPSGDSGPAGPNGPAGPRGPAGPHGPPGKDGRAGSHGTIGAPGARGPPGY
VGPVGPPGAPGLPGPPGPAGGGYDVSGYDEYRADQPALRAKDYEVDATIKSLNTQIENLL
TPEGSRKNPARTCRDIKLSHPEWSSGFYWIDPNQGCSNDAIKVFCDFNTRETCIHAHPGS
IARKNWFRSTEGKKHVWFGETINGGTEFTYNDETISPQSMATQLAFMRLLSNEATQNITY
HCKNSNAYMSDETGDLKRAVVVQGSNDVELRAEGNSRFTFSVLEDGCTRHTGEWSKTVIE
YRTNKPSRLPILDIAPLDIGGADQEFGLDIGPVCFK
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatactcggattctgttgctgcttgcagtaacttcatacctagca
tcatgtcaacactcgggaagagtcaagggtcccagaggagagaaaggacctcgaggtgac
cggggtcctcagggcccaaacggaagagatggcaaacccggactccctggccccgctggc
ccccctggaccccctggacttggaggaaactttgctgctcagtatgatggtgtaaaagct
cccgatcctggccctggacccatgggtatgatgggcgctagaggccctcctggacctcct
ggaccccctggtgctcagggccacaccggacaccctggtgagcccggagagcctggacag
actggccccgttggtccccgtggcccccctggaccccctggcaaatctggagaggacggt
aacaacggcagacctggaaagcccggagacagaggtgcccccggcccacagggcgctcgc
ggattccccggaacccctggacttccaggaatgaagggacacagaggttacactggtctg
gatggacgcaagggagagcctggtggtgctggacccaagggtgagcctggtgcacatgga
gctgctggaagtcccggacttgctggatctcgtggtttgcctggtgagagaggccgtgct
ggccctgctggccctgctggtgctcgtggtgctgatggcaatgttggacccgccggtcct
gctggtcctcttggagctgctggtcccccaggtttccccggtggccccggacccaaggga
gagattggacctgctggagctactggcccaagtggagctcagggagctagaggagagccc
ggtcccaatggcgcagttggacccgtcggtccccctggtaaccctggtaataatggtctg
aacggagccaagggagccgctggcacccctggtgttgctggcgctcctggcttccctgga
ccaagaggaggacctggacctcagggccctcagggtgctactggacagagaggcctcgct
ggagatcctggtgcccagggtgttaagggagatggtggacccaagggagagcctggtaac
tctggacctcagggaccccccggacctcagggtgaggagggtaagagaggacccactggt
gagcttggtgccactggacctgctggaaaccgtggagctagaggtgcccctggcagccgt
ggtatgcctggtagcgagggaagaactggtcctattggaatgcctggtgcccgtggtgcc
actggtgctgctggacctcgtggaccccctggagatgctggccgcgctggtgaatctggc
ccagctggtctcaggggtctcccaggaagccctggaagctccggacccccaggaaaggag
ggacctgctggccctgctggacaagatggccgtggtggaccccctggcccaactggacct
agaggccagcccggaaacattggattccccggacccaaaggacctagtggtgaggctggc
aagcctggagacaagggagccactggccccactggactgagaggaccccctggacctgat
ggcaacaatggagccactggtgctactggacctgctggcggtcccggtgagaagggagag
cagggagctgctggagctcctggcttccagggtctgcctggtcctgctggaggtgctgga
gaggctggcaaacccggagacagaggtatcccaggagaccagggagtttctggacctgct
ggtgccaagggagagcgtggtaaccctggtgctgctggagcttctggacctcagggacca
attggaccccgtggacccgctggagcccccggaactgatggtggcaagggagagcctggc
gctgctggagctgctggcggtcctggacaccagggacctggtggcatgcccggtgagcgt
ggagccgctggaccccctggaggcaagggagagaagggagaggctggacacagaggacct
gacggtaatgctggcagagatggtagccgtggcttgcctggacccgctggacctcctgga
cccactggagccaatggtgataagggtgagagcggtgccttcggacctgctggccctgct
ggagctcgtggagcccctggagagcgtggagaggttggacctgctggagctcctggattc
gctggaccacctggcgctgatggtcagaccggagcaagaggagagcgtggaccttctggt
ggaaagggagaatctggccccgctggtcctgctggacctgctggacagtctggacctcct
ggtgcttctggccctgctggacctactggtgctcgtggagataccggccctcctggtctg
actggtttccctggtgctgctggcagagttggcgctgctggccctgctggtattgttgga
ccccctggcgccgctggtcccgctggtaaggatggacctcgtggtctccgtggtgatcct
ggtccttctggtccttctggagatcagggtatggttggaccacctggcccatctggagag
aagggaccttctggagagcccggtcccgctggtgctcctggtgctcctggaagcagcggt
cctcttggacttcagggattcgttggtctgcctggtgctagaggagatcgtggttcacct
ggtggtgctggtgctgtgggagagcctggtagagttggacccgctggtcccgctggagcc
cgtggtgcccctggcaacattggcctgcctggtatgaccggaccccagggagaggctgga
cgtgagggtaaccctggtaatgatggcccccctggccgtcctggtgctcctggattcaag
ggagatcgtggtgagcccggacctgctggtgccatgggacttgctggtgcccccggacct
gctggacccactggagctgctggcagacctggaaaccgtggagagtctggccctggaggt
cctgctggagctgttggcgccgctggagctagaggtgccgctggacccgctggatcccgt
ggtgagaagggagttgctggtgagaagggagagagaggcatgaagggtctgcgtggacat
gctggtctccagggaatgcccggaccttctggaccctccggtgacagtggacctgctgga
cctaatggacccgctggaccaagaggacctgctggaccccatggacctcctggtaaggac
ggcagagctggtagccatggaactattggcgcccctggtgctcgtggaccccctggatat
gttggacccgttggtcctcctggagctcctggtctgcccggacctcccggccctgctggt
ggtggatatgatgtctctggatatgatgagtacagagccgatcagcctgctctgagagcc
aaggactacgaggtcgatgccactatcaagtccctcaacactcagatcgagaacctgctc
acccctgagggatccaggaagaaccctgcccgcacctgccgtgacatcaaactcagccat
cccgaatggagcagcggattctactggattgaccccaaccagggatgtagtaatgatgcc
atcaaggtcttctgcgacttcaacacccgcgagacctgcatccacgcccaccccggaagc
attgcccgcaagaactggttcagaagcaccgagggcaagaaacacgtctggttcggagag
accatcaacggtggtactgagtttacctacaacgatgagaccatcagcccacagagcatg
gccacccagcttgccttcatgcgcctgctttccaacgaggctacccagaacatcacctac
cactgcaagaacagcaatgcctacatgagtgatgagaccggtgacctgaagagggctgtg
gtggtccagggctccaacgatgtggagctgagagccgagggcaacagccgcttcaccttc
tccgtgctggaggacggctgcactagacacactggtgagtggagcaagacagtcattgag
tacagaacgaataaaccatctcgcctgcccatcctcgacattgcacctttggacattggt
ggagctgatcaggagtttggtttggacattggcccagtctgtttcaaataa
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