Epinephelus lanceolatus (giant grouper): 117263476
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Entry
117263476 CDS
T07331
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117263476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ely03019
]
117263476
03036 Chromosome and associated proteins [BR:
ely03036
]
117263476
Enzymes [BR:
ely01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117263476
Messenger RNA biogenesis [BR:
ely03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117263476
mRNA degradation factors
5'-3' decay
Decapping complex
117263476
Chromosome and associated proteins [BR:
ely03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117263476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
117263476
NCBI-ProteinID:
XP_033492761
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All DBs
Position
12:14469476..14488572
Genome browser
AA seq
489 aa
AA seq
DB search
MATARTENVGPVVMGLNKQNGQLRGQTKPASVQPAPTTQGKALGAPQIAGGAAQDGGGIK
FGDDWKKSLKLPPKDNRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQALVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEFHSSSADCDVEEIEE
KPGRQQDST
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgccagaacagaaaacgttggccctgtcgtcatgggactgaacaagcagaac
gggcagctcagaggacagaccaaaccagcttcagtccagccagcacccacaactcaagga
aaggctttgggtgcaccccagatagcaggtggtgctgctcaggatggaggaggcatcaag
tttggagatgactggaaaaagagcctaaagctccctcccaaagacaacagggtcaaaacc
tcagatgtgacatccactaaggggaatgaatttgaagattactgtctcaaaagagaactc
ctgatgggcatctttgagatgggttgggagaaaccttcccctatccaggaggagagcatt
cccatcgccctgtctggacgggatattctggctcgggccaagaatggaacaggaaagagt
ggagcctatctcatcccactgctggagagaatagacctgaaaaaggaccacatacaggca
cttgtcatggtgcccacccgtgagctggccctgcaggtgagccagatctccatccagatc
agcaaacacctggggggagtcaaagtcatggccaccaccgggggcaccaacctgcgagat
gacatcatgcgtctggatgagactgtgcatgtggtcatcgccacgcctggtagaatcctg
gacttgataaagaaaggagtggcaaaagtggatagggtccagatgatggtgatggatgag
gcggataagctgctgtctcaggattttgtggtgctcatcgaagatatcatcagcttcctg
gccaagaacaggcagatcctgctctactctgcaaccttccccatcagcgtgcagaagttc
atggccaagcaccttcagaaaccctatgagataaacctgatggaggagctcactctgaag
ggcattactcaatactacgcctacgtcacggaaaggcagaaagtccactgcctcaacaca
ctgttctccaggcttcagatcaaccagtcgattatcttctgtaactccactcagagggtg
gagctcttggccaagaagatcactcagctgggctactcctgcttctacatccatgccaag
atgatgcaggaatacagaaaccgtgtgttccatgacttcagaaatggactgtgcagaaac
ctggtctgcactgatctcttcaccagaggtattgacatccaggctgtcaatgtagtcatc
aacttcgacttccccaagaatgctgagacttacctccatcgtattggaagatcagggagg
tttggtcacttgggtttggccatcaacctgatcacatcagaggaccgcttcaacctgaag
gccattgaagaccagctggtgaccgacatcaagcccatacccagcagcatcgacaagagc
ctctacgtggccgagttccactcgtccagtgctgactgtgacgtggaggagattgaggag
aaaccaggacgccaacaggacagcacctaa
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