Epinephelus lanceolatus (giant grouper): 117263500
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Entry
117263500 CDS
T07331
Symbol
col16a1
Name
(RefSeq) collagen alpha-1(XVI) chain isoform X1
KO
K24339
collagen type XVI alpha
Organism
ely
Epinephelus lanceolatus (giant grouper)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
117263500
NCBI-ProteinID:
XP_033492804
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Position
12:32934418..33028456
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AA seq
1617 aa
AA seq
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MWLLCSSLTLLALSFGSCDLLTSEQEEQCPSLQVDEWKFPQASRHNITGFNLVRRFSLLK
SKDVKKIRNPRGPVILRLGKTALLRPTDQVFPNGLPEEFTLIFTLALKKAALRDTVYLFQ
ISDQEGYPQLSLDLSGPEGTLSLRARGVDPTADLVSCVFSGEGVEALMDLSWHKVALSVQ
QGAASLYMDCNSIETKPLEPRGDVLTDGHTLLGIKASDAGPVQMDIQQVMLYCDPFLAMQ
EACCEIPGARCPPDAPKSRRAAENDLLENTFNQEIFASKDLADKCGGCLYLNREENVLNL
GGVAGLKGEKGDRGDSCSGSHSGPCTEGPKGQKGEKGESAQPANWGEAAGYKGDKGQKGE
IGPQGLTGTPGKDGRAGSICVVGPKGQKGTPGLVGPEGLAGEPGRPGLPGLPGIGKPGLP
GRPGEPGGAKGDMGDAGIPGLDGLPGDPGPRGPAGSKGEKGDPCEVCPVLPTDMGNTVAL
QGKPGPKGEPGSPGTGERGPAGPVGADGKAGPKGEPGTGGVKGEKGEPCSVCPTLGELPP
NHVPGVQAQTLQQKGQKGEPAIGLKGEQGEPGNVGSPGLRGEKGSAGTKGADGKPGKPGP
RGPSGKDGQKGPKGEQGLPGLGIPGLKGEKGECGLCQPAEVGSGPAGIKLPDGVRGERGE
PGLPGPPGPPGLGAEGKQGPPGLAGAKGEKGNEGDTGEKGLDGAPGVPGLPGEPGRDGIR
GLKGEKGDACTSCPSVGTAVGDGVAVPGPKGERGEPGPAGDGKPGKNGKPGLPGVQGPAG
PKGGKGEPGDAGVGLPGPQGEEGPRGLPGLAGPPGANGLTGPVGPAGEKGSRGDVGPPGP
QGPEGIGVAGPPGRDGARGHKGSPGDDGRPGFDGAKGDKGEPGECNCLIPVHTGIGGPGA
PGTSANMWQPGPQGPPGPPGPPGPPGPQGVTGTQGPQGIPGNDGLRGEPGLPGYSGITGP
QQLPRDSAGGDGDVGCEDGNCSIGIPGVPGTTGAKGEKGDQGKPGVTPLDSCDKCLERLQ
REQATQPVDDRPGSPGIPGTPGSPGIRGEPGIPGDRGPAGIPGNMGPPGFPGPQGPSGLP
GQQGERGLPGLAGLKGEQGPPGTPGYPGSMGPPGLPGLKGERGSPGSAGQKGESGAPGNP
GYQGPAGAAGIKGDTGPAGPVGAKGDQGFQGQPGFPGPPGAPGPSGKPGREGTTGLKGER
GNDGTQGSQGPTGPPGSPGSPGLMGPPGIEGIDGKDGKPGLRGEAGPPGPIGPRGIPGFK
GKTGHVGFPGQKGEAGPSGAPGSPGRPGHEGDPGTPGTQGRPGPPGHVGPTGPAGPPGPP
GPSGVGLKGDKGQAGERGLPGMGGAPGPPGHPGLIGEPGSDGAPGKDGSAGMPGDNGQPG
QKGEPGAAGQRGPPGERGRPGPPGGGGYHSKDAQPMIGPAGPRGERGSPGSAGIPGSPGP
PGSPGSDAVVNYDEIKNFIRQHVIKIFDERMAYYMSRVQMPVEMVASPGRPGPPGKDGTP
GSPGNPGAPGIPGHIGRQGRPGPQGPAGPRGPTGEKGDKGVGEMGDVGPPGAPGVPGPPG
YGKMGPPGPVGQQGVPGIPGPPGQTGSKGNDGRCNPGDCMSHQVEYSPKGPPMKGPW
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atgtggcttctctgctcctctttgactctgttggccctcagctttggatcatgtgacctg
ctgacatcagagcaagaagaacagtgcccgtccttacaagtggatgagtggaagtttcct
caggcatccaggcacaatatcacaggttttaatctggtgaggcgattttccctgctcaaa
agtaaagatgtcaagaagatccgcaacccacgagggcccgtcatcctccgcctgggcaag
actgcactcctacgcccaactgatcaggtgtttcctaatggcctaccagaggagtttacc
ctgatcttcactctggcgttaaagaaggcggccctgagagacaccgtctacctcttccag
atatctgatcaggagggatacccacagctctctttagacctcagcggccctgagggcacc
ctgtccctgcgtgccagaggggtagaccccacagctgacctggtgagctgcgttttcagc
ggggagggggttgaggccttgatggacttgagctggcacaaggtggccctcagtgtgcaa
caaggagctgcctccctctacatggattgcaactccattgagaccaaacccctggagccc
cgtggagatgtgctcactgatggacacactctgttgggcatcaaggcttcagacgcgggg
cctgtgcagatggacattcagcaggtgatgctgtactgtgacccgttcctcgccatgcag
gaggcctgctgtgagatacctggggcacggtgcccaccagacgctcccaagagccgccgt
gctgctgagaatgatctgttggaaaacacctttaaccaggagatttttgcatcaaaggat
ctggcagacaaatgtggtggttgtttatacctgaatagggaagaaaatgtattaaatctt
ggaggagttgctgggttgaaaggggaaaaaggtgaccggggtgatagctgttctggctcc
cattcaggtccatgcacagagggacccaagggccagaagggagaaaaaggcgagtcggcg
cagcctgccaactggggcgaagcagcagggtacaagggagacaagggtcagaagggagaa
attggccctcagggtctcacaggcaccccagggaaggatggtcgagcggggtccatctgc
gtagtcggccccaagggacagaagggtacaccaggtttggtgggtcctgaggggttggct
ggggagccaggtaggcctggacttccagggctaccagggattggaaagccaggtctacca
ggacgtcctggtgaacccggtggtgccaagggagacatgggagacgcaggaataccagga
ctagatggattgccaggagatccaggaccaagaggaccggcggggtctaaaggagagaag
ggtgacccatgcgaggtgtgccccgtgctgcccacggacatgggaaacacagtggctctg
caggggaagccaggccctaaaggagagcctggatcaccagggacaggagagagaggacca
gctgggcctgtgggtgcagatggcaaagcaggaccgaagggggaaccaggaacaggtggt
gtcaaaggagaaaagggagaaccgtgttctgtgtgccccactctcggagagttacctcct
aaccacgtccctggtgtccaggcccaaaccctgcagcagaagggccagaagggagagccc
gcgatcggactgaaaggagagcagggggagccaggaaatgttggatcacctggcctcaga
ggagagaagggtagcgcaggcaccaaaggagctgatggtaagccgggaaaacctggaccg
aggggacccagtggcaaggatggacagaaaggcccaaagggagagcaaggactgcctggt
cttggtattcctggccttaagggtgagaagggcgagtgcggtctgtgccagccggctgag
gttggcagcggacctgcgggcattaaattgcctgatggagtgcgaggcgagcgtggcgaa
ccaggccttccaggtccaccaggacctccaggtctcggagctgagggcaaacagggccct
ccaggacttgctggtgcaaaaggagaaaagggtaacgaaggagatacaggagaaaaggga
ctggacggagctcctggagtcccaggactgcctggagagcctggtcgggatggaataaga
ggcttgaagggagagaagggtgatgcttgtaccagctgtccttctgtgggcactgcagtg
ggtgatggtgtagctgtgccaggccccaaaggagagagaggagaacccggtcctgcaggg
gatgggaagccaggcaaaaatggaaaaccaggattaccaggtgtgcaggggcctgctgga
cccaaaggaggcaagggagagcctggagatgcaggagttggccttccaggaccccaaggt
gaagagggaccaagagggctcccaggacttgcaggaccgcctggagccaacggactgact
ggccctgttggtcctgcaggggaaaagggctccagaggagatgttggacctccaggacca
caggggcctgagggcattggagtagcagggcccccgggtagagatggagcccgcgggcat
aaaggatcgccaggagatgatggcagacctggatttgacggggctaagggggacaagggg
gaacctggagagtgcaactgcttaatccccgtgcacacgggtataggtggacctggagct
ccaggaacttcagcaaacatgtggcagcccgggcctcagggcccaccaggacctcctggc
ccacctggcccacccgggcctcagggtgttactggaacccaaggaccacagggtatccct
ggaaacgacgggttacggggggaaccgggtttgcctggatacagcggcatcacaggacca
cagcagcttcctcgagactctgctggaggagatggggatgtgggctgtgaagatgggaac
tgctccataggaattccgggtgtaccaggcacgactggtgctaagggagaaaaaggagac
cagggtaagcctggtgtaacccccttggacagctgtgacaagtgtttggagagactgcag
agagagcaggcgacacaaccagtggatgacagaccaggatcacctggaattccaggaacg
cctggatcaccgggaatcaggggagagcctggtataccaggagatagaggtccagctgga
ataccagggaacatgggacctcctggtttcccaggtcctcagggcccatctggtttacct
ggtcagcagggtgagcgagggttacccggcctcgcaggactgaagggcgaacagggccct
ccagggacgcctggctatccaggatccatgggaccgcctggacttcctggactgaagggc
gaacgcgggagcccaggaagcgctggtcagaaaggagaatcaggggctcctggtaaccct
gggtaccaagggccggctggtgcagcgggcattaaaggagacacgggaccagcagggcct
gttggtgccaaaggggatcagggtttccaaggacaaccaggtttcccaggaccaccaggt
gcaccaggtccttccggaaaacctggaagggaaggtaccactgggctcaaaggcgaaagg
ggcaatgatggcactcaaggttcccagggaccaactggaccaccaggctccccaggctcc
cctgggctgatgggcccccctgggattgagggaattgatggaaaagatgggaaaccaggg
ctgcggggagaggcaggccctccaggcccaataggaccacgaggaatcccaggattcaaa
gggaaaaccggccatgttggcttccctggacagaagggtgaagctgggccttcaggtgca
cctggatcaccaggcaggccaggacacgagggtgatcccggcaccccaggaacccaggga
cgacctggaccccccggccacgttggccctacaggtccagctggaccaccaggacctcct
ggtccttcgggagtgggtctaaaaggagataagggccaagccggtgagaggggtcttcca
gggatgggaggagccccaggaccacccgggcacccagggctcattggagagccaggcagc
gatggtgcccctggcaaagatggatcggcaggcatgccaggggacaacgggcagccaggt
caaaagggtgaaccaggtgccgcaggccagaggggtcctccaggagagagaggtcgaccc
gggcctcctggcggtggaggttaccactcaaaggacgcacagcccatgattggcccagcc
ggacccagaggagagaggggaagcccaggctcagcagggatccctgggtcgcccggtcct
ccagggtcaccaggaagtgatgctgtagtcaattatgatgaaatcaagaacttcatccgc
cagcatgtcatcaagatctttgatgagagaatggcctactacatgtctcgagtacagatg
cctgtagagatggtggcatccccaggtcggcctgggcccccagggaaagatggaacacca
ggtagtcctgggaatcccggtgcacctggaatcccaggacatatcggcagacaaggccgg
ccaggaccccaaggacccgctggaccacgaggaccaactggagaaaaaggagataagggt
gttggagagatgggagatgttggacctccaggagcaccaggcgttccaggtcccccaggc
tatggaaagatgggacccccaggtcctgttggccagcagggtgttcctggaatcccaggc
cctcctgggcagactggttcaaagggaaatgatggacgatgtaatcctggagactgtatg
agccatcaagtagagtacagccccaagggcccacctatgaagggcccctggtaa
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integrated database retrieval system
