Epinephelus lanceolatus (giant grouper): 117265124
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Entry
117265124 CDS
T07331
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117265124 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ely03032
]
117265124 (topbp1)
03400 DNA repair and recombination proteins [BR:
ely03400
]
117265124 (topbp1)
DNA replication proteins [BR:
ely03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
117265124 (topbp1)
DNA repair and recombination proteins [BR:
ely03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
117265124 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
117265124
NCBI-ProteinID:
XP_033495436
LinkDB
All DBs
Position
13:complement(28172286..28189594)
Genome browser
AA seq
1519 aa
AA seq
DB search
MSKGDKEGFIVKFVESNGQRTEYAAKAYEAISELQSDKYLKTIEEDAVLQMDQKDKSLFV
FSSFTSPAFLHCKRLGCRVVSPLVVLYCLQQQHCVPRAEKPVYNMAMADITISCTSLDKA
TRTEVMDLVQLMGGRVYLDLNVSVTHLIAGEVGSKKYLVAASLGKPILLPTWIKACWEKS
QDSLFRYTDLPIEDYLCPVLRGCTVCVTGLSSTERKEVQRLCEQHGATYSGQLKMNECTH
LIVSEPTGQKYECAKKWNVYCVSLHWLFDSIEKGFCQDESRYAVERNASKTTRPHTSTPT
GTNKKDEGPSLLGLSHISVNASMTINDTALTNGSISRLEAPDPIDTLDLTVCPADDILDG
CKLYLCGLPGKKLEKLKRLVNAAGGLRFNQPSEELTHVVMGELDQELKNFLSKATHRPHV
VTVQWLLDSFNKGSLLPEADYLHPDCLPLAAAAVTVPAHHTPTSRVSAGPPAASPSTPRQ
TRAEEDLLSQYMDDDPTVVDMPPPAEGSSRRSVSISVEPQPESWAPNHTRGPEADSTLQE
ASAAGLFFKKRFLLVGFGAEAEAQLSLLVMENGGRVLMGRTRVVADYAVVPLLGCSVEAT
VDEVVTDTWLAMCVEKECVLQLSSNPLFTPVPVMDGRFPLKDCVLSVSQFTGAERESLVD
LAKHLGANVQDYFVRLANQKKGMLASTHLVLQSPEGTKYQAAKKWGLPAVTMHWILESAR
TGQRAEEGRFLVDLPPSPERDDESFVGGSQRQAMPPPARSSPEIPLLGLQSGKAVTPLDL
GRFQSKVFRSVLDAKKPKEDVSTPKQNQGVGKRNPLQKEAPLQLDTPSRFLSRDQLFRPS
FNVKDALGDLETPGGRSKPGERVDTPLTDVINRNLRVALANSSRNSTSDMQAISASPQFT
KTTEKEVPEKEAGPLTGVVICVGKKLSKMQSELNAIAASLGADFRWACDDTVTHYIYQGR
VGDNTREYRGVKERGLHVVSQCWLQACADEQRHVPESLYPFTYNPKMSLNLSQVPNSSQR
SPPLTRTQRKDATDAKDDKSEHVATEEATTLRRVSDGSVDREEMNDTADKSDSSETLEMR
ENLQRQLQEIMSATKLTTGRRTSVRLSRMGSGGADSGPNTPDGSRVGRCGSRRTLEALRV
SREAAMDFNTEPSQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSEPLAPPPPPTAENG
PQFRDSMTDSELVEMAACEVIDQHMGPRITTPLTERRENDLLTPEAPSIAFPLAKPAVAP
EPQEEREEEKQPPRFQLSSLSPQERIDYSHLIEELGGVVLDKQSFDPSCSHIIVGTPLRN
EKYLAAMAAGKWILHRSYLEACRSVGRFIPEEEYEWGSSSILDALPSITSQQRRLALAAM
RWRKALQGHSEQGGAFSGWTVMLNIDQSRESGFRRLLQSGRAKVLLSPSPSLYKEATHLF
ADFSRLKPGDFRVDVSEATSHGVTCLKPEYIADYLMQEPTPPIELYYLTEAPSEETPDTP
SRKRKAAADNSRLKKTRLT
NT seq
4560 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaggagacaaggaaggcttcattgtcaagtttgtggaaagtaatggacaaagg
acagaatatgctgccaaagcttatgaggccatttcagagctccagtctgacaagtacttg
aaaaccatcgaagaagatgcagttttacagatggaccagaaggacaagtctctgtttgtc
ttcagcagcttcaccagcccagcctttctgcactgcaaaaggcttggctgccgggtggtg
agcccactggtggtgttgtactgtctgcagcagcagcattgtgttcccagagcagagaaa
cccgtctataacatggccatggctgacatcactatttcctgcaccagtctggataaagca
acacggacagaggtgatggatctggtgcagctcatgggtggacgggtctatctggactta
aatgtatctgtcacacacctgatagcgggagaggtgggcagcaagaaatatctggtagct
gccagccttggtaaacccatcctgctgcccacatggatcaaagcctgctgggagaaatct
caggatagtcttttcaggtatacagatctgcccattgaggactatctgtgccctgtgctg
cgtggctgcactgtttgtgtgacaggcctctccagcacagagcgcaaagaggtgcagcgg
ctctgtgaacagcacggagccacctacagcggtcaactcaagatgaatgagtgtacacac
ctcatcgttagtgagccgacaggtcagaagtacgagtgtgcaaagaagtggaatgtgtat
tgcgtgtctttgcactggctgtttgacagcatagagaagggcttttgtcaagacgagagc
aggtacgctgtggagcgtaatgcatcaaagacaactcgacctcacacctcaacccccact
ggcaccaacaagaaggacgagggtccatctctgttgggtttaagtcacatatctgtcaat
gccagcatgacaataaatgacacagccctcaccaatggcagcatcagccgcctggaggct
ccagaccccatagacactctagatctcaccgtctgcccagctgatgatatactggatggc
tgtaagctgtatctgtgtggcctgccagggaagaaactggagaagctgaagcgtcttgtg
aatgctgcaggaggtctgcgcttcaatcagcccagtgaggaactcacacatgtggtcatg
ggagagctggaccaggagctcaagaattttctctccaaagcaacacatagaccccacgta
gtgacagtacagtggctgctggacagtttcaacaaaggcagtctactcccagaagcagat
tacctccacccagactgtctgcccctggctgcggctgctgtcactgtgcctgcccatcac
actcccacctcccgggtctcagctggtccgcctgcagccagtcccagtactcccagacaa
acaagagcagaggaagatctgctctcacagtacatggatgacgaccctacagtagtggat
atgcccccaccagcagagggcagcagcaggaggtccgtcagtatatctgtagagcctcag
cctgaatcctgggcaccaaaccacaccagaggaccagaggcggactcgaccttgcaggaa
gccagcgctgcaggcctgtttttcaagaaacgtttcctccttgtgggctttggcgctgag
gccgaggcccagctttctctactggtgatggaaaacggaggcagggtgctgatgggtcgc
acacgtgttgtggcagactacgcggtggtaccactattgggctgttcagtggaggcaaca
gtggacgaggtggtcacagatacctggctggccatgtgtgtggagaaggagtgtgttctg
cagctgtcctccaaccctttgttcacccctgttcctgtgatggacggacgttttcctctc
aaagactgtgttctgtctgtcagtcagttcaccggagcagagagggagtctttggtggac
ctggccaagcacctcggagccaatgtccaggattactttgtgcgcctggccaaccagaag
aaagggatgctggccagcactcatctggtgctgcagagcccagagggcacaaagtaccag
gcagccaagaaatgggggcttccagccgtcactatgcactggatactagagtctgctcgg
accggccagcgggcggaggaggggcgttttctagttgacctgccaccctcaccagagagg
gatgatgagagttttgtcggtggctcccagaggcaagccatgcctccaccagcacgttcg
tccccagagatccctctcctgggtctccagagtggcaaggctgttaccccgctggatctg
ggccgcttccagagcaaagtgttccgctctgtgttggacgcgaagaaaccaaaagaggac
gtcagcacccccaaacaaaaccagggggttggcaaaaggaacccccttcagaaggaagcg
cctctgcagctggacactccctcccgtttcctcagcagagaccagctgttcaggccttcc
ttcaatgtcaaggatgcacttggagatctggagactccagggggaagatccaaaccagga
gagagggtagatactccactgactgatgtcatcaacaggaatctgagggtagctctcgcc
aacagctcccgaaattccacctcagatatgcaagccatctctgctagcccccagtttacc
aagacgactgagaaggaggtcccagaaaaagaagccggccctctgactggtgtcgtgatc
tgcgtagggaagaagctgagcaaaatgcaaagtgaactcaatgccattgctgcctcactt
ggagctgacttcaggtgggcttgtgatgacacagtgacacactacatctaccagggccgt
gtcggggacaacacccgggagtacagaggagtgaaagagagagggctgcatgtggtctcc
cagtgctggctacaggcttgtgctgacgagcagagacatgtccccgagtctctctatcct
ttcacctacaaccccaagatgagcctgaacctcagccaggtgcccaacagctctcagagg
tctccacctttaacacgaacccaacgcaaagacgccactgacgcaaaggacgacaagagt
gaacacgttgccacagaagaagccacaactttacgtcgtgtaagtgatggaagcgtcgat
cgggaagagatgaatgatactgcagataaaagtgatagttcagagactctagaaatgaga
gagaacctgcagaggcagctccaggagatcatgtcagccaccaagctgacgacagggagg
cgtacctcagtcagactcagcaggatgggatcaggaggggccgactcgggccccaacaca
cctgatgggagccgggtcggacgctgcgggagcagacgaactctggaagctctcagggtt
tccagagaagcagccatggacttcaacacagagccatctcagagtgaacagatcgtttgg
gacgaccctacagccagggaggagagagccaagctggctgataacctacagtggcctggg
agtccctcacaacactctgagcccctcgcacctccacctcctcccaccgcagaaaacggc
cctcagttcagggactccatgacggactcagagctagtggagatggctgcttgtgaagtc
attgaccagcatatgggtccgagaatcacaacgcccctgacagagaggcgagaaaatgac
ctccttactcctgaagccccgagcatcgccttccctctcgccaaacctgcagtagcaccg
gagccacaggaggagcgtgaggaagaaaagcagccacccagatttcagctgtcctccctc
agccctcaggagcgcattgattacagtcacctcatagaggagcttggcggtgtagtcctg
gacaagcagtctttcgaccccagctgttcccatatcatcgtagggactcctctgcgcaac
gagaagtacctggcagcaatggcggcgggcaaatggattctgcaccgctcgtacctggag
gcctgccgctctgttggacgctttatcccggaggaggagtatgagtggggcagtagctcc
attctggatgcgttgccctccatcacctcccagcagaggaggctggcgttagctgccatg
cgctggagaaaagcactgcagggacactctgagcaagggggagccttcagtgggtggact
gtcatgctgaacatcgaccagagcagagaatcaggcttcaggcggttactgcagtctggc
agggcgaaggtcctgctgagtccctccccgtccttgtacaaggaggccactcacctgttt
gcagacttcagtcggctgaagcctggagacttcagagtcgatgtatctgaagctacctct
catggagtcacatgcctaaaaccagagtacatcgcagactacctcatgcaggagccgacc
ccgcccatcgagctgtactacctgactgaagctccctctgaagaaactccagacactccg
tcacgtaagcgcaaagcagccgcagacaactccaggctgaaaaagacacgtctgacctga
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integrated database retrieval system
