Epinephelus lanceolatus (giant grouper): 117265928
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Entry
117265928 CDS
T07331
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117265928 (ddx61)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ely03019
]
117265928 (ddx61)
03036 Chromosome and associated proteins [BR:
ely03036
]
117265928 (ddx61)
Enzymes [BR:
ely01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117265928 (ddx61)
Messenger RNA biogenesis [BR:
ely03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117265928 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
117265928 (ddx61)
Chromosome and associated proteins [BR:
ely03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117265928 (ddx61)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
117265928
NCBI-ProteinID:
XP_033496644
LinkDB
All DBs
Position
14:17693254..17704576
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AA seq
482 aa
AA seq
DB search
MATARTANPAAMIGLNKQANGQLRGQPGLLATAQQPSALQKKTSIPQSSGGIKFGDDWKK
CLELPPKDTRMKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESIPIALSGR
DILARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQVSQISIQLSKHLGGV
KIMATTGGTNLRDDIMRLDEIVHVVIATPGRILDLIKKGVAKMDRAQMIVMDEADKLLSQ
DFVVLIEDIISFMSKDRQILLYSATFPISVQKFMSKHLRKPYEINLMEELTLKGITQYYA
YVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRN
RVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLA
INLITSDDRYNLKNIEDQLVTDIKPIPSSIDKSLYVAEFHSVDPDADGDDEGGALNNELG
AI
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcaagaacagcaaacccagcagcaatgattggattgaacaaacaagcaaat
gggcagctcagaggacagccgggactccttgcaactgcccaacagcctagtgctctccag
aaaaagaccagcattcctcaaagcagtgggggcatcaagtttggagatgactggaagaaa
tgcctggaacttcccccaaaagacaccagaatgaaaacttcggatgtgacatcaactaag
ggaaatgaattcgaagactactgcctaaagcgggaactactaatgggaatctttgaaatg
ggatgggagaaaccgtcccctgtccaggaggaaagcatccctatcgctctgtcaggaaga
gatattttggctcgggccaagaatggtacaggaaaaagtggagcctacctcatccctctc
ctggagaggatagacctgaagaaagatcacatccaggccatagtgatggtgccaacgaga
gagttggccctgcaggtgagccagatcagcattcagctcagcaagcacctaggaggggtc
aagatcatggcgactacaggcggtaccaacttgagggatgacatcatgcgcctcgatgag
atagtgcatgtagtgatcgcgacaccaggcaggatactcgacctgatcaagaagggtgtg
gcaaaaatggacagggcccaaatgattgtgatggatgaggcagataagctgctgtcccag
gactttgtggtcctgatcgaagatataataagcttcatgtcaaaagatcgtcagatcctg
ctttactctgccactttccccatcagtgtgcaaaagttcatgagcaagcacctaaggaag
ccttatgagatcaatctgatggaggaactgaccctgaagggcatcactcagtactatgcc
tatgtgacggaaagacagaaggtccactgtcttaacacactcttttctaggcttcagatc
aaccagtctatcatcttctgcaactccacccagagggttgagcttctggccaagaaaatc
acccagctgggttattcctgcttctacatccatgcgaagatgatgcaggaatacaggaac
cgtgtgttccatgacttcaggaacggactgtgcagaaacctggtctgcacagacctgttt
actcggggtatcgacatccaggcagtcaatgtggtcatcaactttgacttccccaaaaat
gcagagacctacctgcatcgcatcggcagatcagggcgctttggtcatctgggtctggcg
atcaatctgataacttcagatgaccgctacaacctgaagaacattgaggatcagctggtc
actgacataaagcccatccccagcagcattgataagagcctgtatgtggcagagtttcac
tctgttgacccagatgctgacggcgacgacgaaggtggagccttaaacaatgaactgggg
gcgatctga
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