Epinephelus lanceolatus (giant grouper): 117267231
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Entry
117267231 CDS
T07331
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117267231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ely03021
]
117267231
03019 Messenger RNA biogenesis [BR:
ely03019
]
117267231
Transcription machinery [BR:
ely03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117267231
Messenger RNA biogenesis [BR:
ely03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117267231
U7-dependent histone pre-mRNA processing factors
117267231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
117267231
NCBI-ProteinID:
XP_033498877
LinkDB
All DBs
Position
15:7383126..7391188
Genome browser
AA seq
690 aa
AA seq
DB search
MATKRKVEVIVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCAQGQRVSGILVKKNFNYHILNPSDLSTYTELAMSTVKQTQAIPFTGPYSLLVCHLRNL
TGDVEELDGTEKNTLRIFKNITLIHEVGMVLLEWLANPLNDMYADAVTTVVLEVQSNPKA
QKAMETQSVIMDMDVFQTRLAVMLQDMFGEECVDFSDGKSISVTVDGKTVLICLETRSVC
YEDECTEDDSLREMVELAVQRLYDALNPVI
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaaacgcaaagtagaggtgattgtccctgcagaggagagtgaccagctgctt
atccgtccactgggtgctggtcaggaggttgggaggtcatgcatcatcctggagttcaaa
ggaaggaaaattatgctggactgtggtatccaccctggtttggagggaatggatgctctc
ccctacatagacttgatcgacccagctgagatagacctgctgctcatcagccatttccac
ttggatcactgtggagctctgccctggttcctccagaagaccagctttaaaggcaggacc
ttcatgacccacgccaccaaggccatctaccgctggctactgtcggactacgtcaaagtc
agcaacatttctgcagatgacatgctgtacactgagactgatctggaggagagcatggat
aagattgagaccatcaacttccacgaggtgaaggaggtggctggaatcaagttctggtgc
tatcacgctggtcatgtgctgggagctgccatgttcatgatcgaaatagctggagtcaag
ctgctgtacacgggagacttctcccgacaggaggacagacatctgatggcagctgagatc
ccaagtgtcaaacctgacatcttaatcatagagtcgacctacggaacccacatccatgag
aagagggaggagcgcgaagctcggttctgcaacacagtccatgacatcgttaacagagag
ggtcgctgtttaatccctgtgtttgccctggggcgcgcccaggaactgctgctcatcctg
gacgagtactggcagaaccacccagagctccatgacatccccatctactacgcttcatcc
ctggccaagaagtgcatggctgtgtaccagacctacgtcaatgcaatgaacgacaagatc
cgcaaggcgatcaacatcaacaacccttttgtcttcaaacacatcagcaacctcaagagc
atggatcactttgatgacatcggtcccagtgtggtgatggcgtctccaggtatgatgcag
agcgggctgtccagagagctcttcgagagctggtgcaccgataagaggaacggagtcatc
atcgctggatactgtgtggagggcacactggccaagcacatcatgtctgagccagaggag
atcaccaccatgtcagggcagaagctgcagctgaagatgtcagtggactacatctctttc
tctgcccacactgactaccagcagaccagcgagttcatcagagccctcaaaccacctcat
gtgatcctggtccacggggagcagaatgagatggcccgtctgaaggctgcgctgatcagg
gagtacgaggataacgaccaggttcacatcgaagtccacaaccctcgcaacacagaggct
gtcaccctcaacttcaggggagagaaactggccaaggtgatgggctctctggctgataag
aagtgtgcgcagggccagagggtgtcaggcatactggtgaaaaagaacttcaactaccac
atccttaatccctccgacctttctacatacacagagctggccatgagcacagtgaaacag
acccaggccatccccttcactggaccttactcactgcttgtctgccatctgaggaacctc
actggtgacgtggaggagcttgacggaaccgagaagaacaccttgaggatttttaaaaac
atcactctgatccacgaggtcggcatggtgctgctggagtggctagcaaaccctctcaat
gacatgtacgccgacgccgtcaccactgtagtgctggaggtccagtcaaacccaaaggct
cagaaagccatggagacccagagtgtcatcatggacatggacgtcttccaaacccgactg
gcagtcatgttacaggacatgtttggggaggaatgtgtggatttcagtgatggtaaaagc
atctctgtgaccgtagatggaaagacggttctcatctgcttggaaacaaggtcggtgtgc
tacgaggatgaatgcacagaagacgactctctgagggagatggtggagctggcagtgcag
cggctctacgacgccctcaacccagttatctga
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